Difference between revisions of "PWY-3861"

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(Created page with "Category:pathway == Pathway PWY-6906 == * taxonomic-range: ** tax-641 * common-name: ** chitin derivatives degradation == Reaction(s) found == * N-ACETYLGLUCOSAMINE-KINA...")
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==  description ==
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[[Category:pathway]]
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== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Pathway PWY-6906 ==
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Model summary: [[MEDIA:summary.txt|summary]]
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* taxonomic-range:
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** tax-641
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Download '''AuReMe''' Input/Output [LINK OR MEDIA data]
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* common-name:
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** chitin derivatives degradation
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The automatic reconstruction of '' Ruminococcus flavefaciens'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 1445 reactions, 1390 metabolites, 828 genes and 763 pathways. This GeM was obtained based on the following sources:
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== Reaction(s) found ==
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* Based on annotation data:
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* [[N-ACETYLGLUCOSAMINE-KINASE-RXN]]
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** Creation of a metabolic network containing 919 reactions
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* [[NAG6PDEACET-RXN]]
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* Based on orthology data:
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* [[RXN-12627]]
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** Creation of a global metabolic network containing 676 reactions
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== Reaction(s) not found ==
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*** From template ''faecalibacteriumprausnitziia2-165_heinken2014'' creation of a metabolic network containing: 315 reactions
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* [NonePHOSACETYLGLUCOSAMINEMUT-RXN PHOSACETYLGLUCOSAMINEMUT-RXN]
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*** From template ''l_plantarum_wcfs1'' creation of a metabolic network containing: 211 reactions
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* [NoneTRANS-RXN0-445 TRANS-RXN0-445]
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*** From template ''bthetaiotaomicron_heinken2013'' creation of a metabolic network containing: 296 reactions
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* [NoneGLUCOSAMINE-6-P-DEAMIN-RXN GLUCOSAMINE-6-P-DEAMIN-RXN]
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*** From template ''ecoli'' creation of a metabolic network containing: 448 reactions
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* [NoneGLUCOSAMINE-KINASE-RXN GLUCOSAMINE-KINASE-RXN]
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*** From template ''bifidobacteriumadolescentisl2-32'' creation of a metabolic network containing: 214 reactions
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* [NoneRXN-12629 RXN-12629]
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* Based on expertise:
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{{#set: taxonomic-range=tax-641}}
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** 110 reaction(s) added
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{{#set: common-name=chitin derivatives degradation}}
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{{#set: nb reaction found=3}}
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*List of tools used:
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{{#set: completion rate=0.38}}
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** Tool: [http://bioinformatics.ai.sri.com/ptools/ PathwayTools]
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{{#set: nb total reaction=8}}
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** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
 
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[[FILE:venn.png|frameless|border]]
 
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== Collaborative curation ==  
 
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* Suggest reactions to add or remove:
 
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
 
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* Suggest new reactions to create and add:
 
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** Download this [[MEDIA:Reaction_creator.csv|form]]
 
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
 
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* Send the filled form(s) to: jeanne.got[at]irisa.fr
 

Revision as of 18:41, 23 November 2020

Pathway PWY-6906

  • taxonomic-range:
    • tax-641
  • common-name:
    • chitin derivatives degradation

Reaction(s) found

Reaction(s) not found

  • [NonePHOSACETYLGLUCOSAMINEMUT-RXN PHOSACETYLGLUCOSAMINEMUT-RXN]
  • [NoneTRANS-RXN0-445 TRANS-RXN0-445]
  • [NoneGLUCOSAMINE-6-P-DEAMIN-RXN GLUCOSAMINE-6-P-DEAMIN-RXN]
  • [NoneGLUCOSAMINE-KINASE-RXN GLUCOSAMINE-KINASE-RXN]
  • [NoneRXN-12629 RXN-12629]



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