Difference between revisions of "GKI-RXN"

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(Created page with "Category:reaction == Reaction IGPSYN-RXN == * direction: ** left-to-right * common-name: ** indole-3-glycerol phosphate synthase trpc * ec-number: ** [http://enzyme.expasy...")
 
(Created page with "Category:reaction == Reaction SHIKIMATE-5-DEHYDROGENASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25] == Reaction...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction IGPSYN-RXN ==
+
== Reaction SHIKIMATE-5-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** indole-3-glycerol phosphate synthase trpc
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.48 ec-4.1.1.48]
+
** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[RUMFLAFD1_RS0112365]]
+
* Gene: [[RUMFLAFD1_RS0106595]]
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_bifidobacteriumadolescentisl2-32]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23477 23477]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17739 17739]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P42393 P42393]
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
−
** [http://www.uniprot.org/uniprot/P20577 P20577]
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
−
** [http://www.uniprot.org/uniprot/P18304 P18304]
+
** [http://www.uniprot.org/uniprot/Q58484 Q58484]
−
** [http://www.uniprot.org/uniprot/Q06121 Q06121]
+
** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
−
** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
+
** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
−
** [http://www.uniprot.org/uniprot/P20578 P20578]
+
** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
−
** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
+
** [http://www.uniprot.org/uniprot/Q44606 Q44606]
−
** [http://www.uniprot.org/uniprot/Q58328 Q58328]
+
** [http://www.uniprot.org/uniprot/Q44608 Q44608]
−
** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
+
** [http://www.uniprot.org/uniprot/Q44609 Q44609]
−
** [http://www.uniprot.org/uniprot/P03964 P03964]
+
** [http://www.uniprot.org/uniprot/Q44610 Q44610]
−
** [http://www.uniprot.org/uniprot/P00910 P00910]
+
** [http://www.uniprot.org/uniprot/Q44611 Q44611]
−
** [http://www.uniprot.org/uniprot/P00909 P00909]
+
** [http://www.uniprot.org/uniprot/Q44612 Q44612]
−
** [http://www.uniprot.org/uniprot/P00911 P00911]
+
** [http://www.uniprot.org/uniprot/P15770 P15770]
−
** [http://www.uniprot.org/uniprot/P17217 P17217]
+
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
−
** [http://www.uniprot.org/uniprot/P20409 P20409]
+
** [http://www.uniprot.org/uniprot/O65917 O65917]
−
** [http://www.uniprot.org/uniprot/P00937 P00937]
 
−
** [http://www.uniprot.org/uniprot/P00908 P00908]
 
−
** [http://www.uniprot.org/uniprot/P05328 P05328]
 
−
** [http://www.uniprot.org/uniprot/P06531 P06531]
 
−
** [http://www.uniprot.org/uniprot/P18483 P18483]
 
−
** [http://www.uniprot.org/uniprot/P25170 P25170]
 
−
** [http://www.uniprot.org/uniprot/P26938 P26938]
 
−
** [http://www.uniprot.org/uniprot/P24773 P24773]
 
−
** [http://www.uniprot.org/uniprot/Q01999 Q01999]
 
−
** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
 
−
** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
 
−
** [http://www.uniprot.org/uniprot/Q92370 Q92370]
 
−
** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
 
−
** [http://www.uniprot.org/uniprot/P94327 P94327]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=indole-3-glycerol phosphate synthase trpc}}
+
{{#set: ec-number=ec-1.1.1.25}}
−
{{#set: ec-number=ec-4.1.1.48}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_bthetaiotaomicron_heinken2013|output_pantograph_l_plantarum_wcfs1|genome_a|output_pantograph_ecoli}}
+
{{#set: reconstruction source=output_pantograph_bifidobacteriumadolescentisl2-32|genome_a|output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014|output_pantograph_ecoli|output_pantograph_l_plantarum_wcfs1|output_pantograph_bthetaiotaomicron_heinken2013}}

Revision as of 18:51, 23 November 2020

Reaction SHIKIMATE-5-DEHYDROGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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