Difference between revisions of "3.4.21.92-RXN"

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(Created page with "Category:reaction == Reaction 3.4.21.53-RXN == * direction: ** left-to-right * common-name: ** endopeptidase la * ec-number: ** [http://enzyme.expasy.org/EC/3.4.21.53 ec-3...")
 
(Created page with "Category:reaction == Reaction GLYRIBONUCSYN-RXN == * direction: ** left-to-right * common-name: ** phosphoribosylamine--glycine ligase * ec-number: ** [http://enzyme.expas...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.4.21.53-RXN ==
+
== Reaction GLYRIBONUCSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** endopeptidase la
+
** phosphoribosylamine--glycine ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.21.53 ec-3.4.21.53]
+
** [http://enzyme.expasy.org/EC/6.3.4.13 ec-6.3.4.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
+
* 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[RUMFLAFD1_RS0117215]]
+
* Gene: [[RUMFLAFD1_RS0108660]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
 +
** '''7''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_bifidobacteriumadolescentisl2-32]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P36774 P36774]
+
** [http://www.uniprot.org/uniprot/P07244 P07244]
−
** [http://www.uniprot.org/uniprot/P36773 P36773]
+
** [http://www.uniprot.org/uniprot/Q58347 Q58347]
−
** [http://www.uniprot.org/uniprot/P43864 P43864]
+
** [http://www.uniprot.org/uniprot/P12039 P12039]
−
** [http://www.uniprot.org/uniprot/O66605 O66605]
+
** [http://www.uniprot.org/uniprot/P21872 P21872]
−
** [http://www.uniprot.org/uniprot/Q9ZD92 Q9ZD92]
+
** [http://www.uniprot.org/uniprot/P15640 P15640]
−
** [http://www.uniprot.org/uniprot/Q9ZJL3 Q9ZJL3]
+
** [http://www.uniprot.org/uniprot/P00967 P00967]
−
** [http://www.uniprot.org/uniprot/Q9X1W8 Q9X1W8]
+
** [http://www.uniprot.org/uniprot/P16340 P16340]
−
** [http://www.uniprot.org/uniprot/O83536 O83536]
+
** [http://www.uniprot.org/uniprot/P22102 P22102]
−
** [http://www.uniprot.org/uniprot/Q9Z9F4 Q9Z9F4]
+
** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
−
** [http://www.uniprot.org/uniprot/P55995 P55995]
+
** [http://www.uniprot.org/uniprot/P43845 P43845]
−
** [http://www.uniprot.org/uniprot/O84348 O84348]
+
** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
−
** [http://www.uniprot.org/uniprot/P47481 P47481]
+
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
−
** [http://www.uniprot.org/uniprot/O51558 O51558]
+
** [http://www.uniprot.org/uniprot/P20772 P20772]
−
** [http://www.uniprot.org/uniprot/O69300 O69300]
+
** [http://www.uniprot.org/uniprot/P26977 P26977]
−
** [http://www.uniprot.org/uniprot/Q59185 Q59185]
+
** [http://www.uniprot.org/uniprot/Q59492 Q59492]
−
** [http://www.uniprot.org/uniprot/Q9JUC0 Q9JUC0]
+
** [http://www.uniprot.org/uniprot/P74232 P74232]
−
** [http://www.uniprot.org/uniprot/P37945 P37945]
+
** [http://www.uniprot.org/uniprot/Q42804 Q42804]
−
** [http://www.uniprot.org/uniprot/P77810 P77810]
+
** [http://www.uniprot.org/uniprot/P52421 P52421]
−
** [http://www.uniprot.org/uniprot/P46067 P46067]
 
−
** [http://www.uniprot.org/uniprot/P78025 P78025]
 
−
** [http://www.uniprot.org/uniprot/Q59511 Q59511]
 
−
** [http://www.uniprot.org/uniprot/P0A9M0 P0A9M0]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=endopeptidase la}}
+
{{#set: common-name=phosphoribosylamine--glycine ligase}}
−
{{#set: ec-number=ec-3.4.21.53}}
+
{{#set: ec-number=ec-6.3.4.13}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome_a}}
+
{{#set: reconstruction source=output_pantograph_ecoli|genome_a|output_pantograph_bifidobacteriumadolescentisl2-32|output_pantograph_l_plantarum_wcfs1}}

Revision as of 18:51, 23 November 2020

Reaction GLYRIBONUCSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphoribosylamine--glycine ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
    • 7 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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