Difference between revisions of "PWY-3861"

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(Created page with "Category:pathway == Pathway PWY-3861 == * taxonomic-range: ** tax-58023 * common-name: ** mannitol degradation ii == Reaction(s) found == * MANNKIN-RXN * MANNPISOM-R...")
 
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==  description ==
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[[Category:pathway]]
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== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Pathway PWY-3861 ==
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Model summary: [[MEDIA:summary.txt|summary]]
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* taxonomic-range:
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** tax-58023
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Download '''AuReMe''' Input/Output [LINK OR MEDIA data]
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* common-name:
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** mannitol degradation ii
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The automatic reconstruction of ''MODEL_NAME'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 1445 reactions, 1390 metabolites, 828 genes and 763 pathways. This GeM was obtained based on the following sources:
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== Reaction(s) found ==
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* Based on annotation data:
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* [[MANNKIN-RXN]]
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** Creation of a metabolic network containing 919 reactions
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* [[MANNPISOM-RXN]]
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* Based on orthology data:
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== Reaction(s) not found ==
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** Creation of a global metabolic network containing 676 reactions
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* [NoneRXN-14500 RXN-14500]
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*** From template ''faecalibacteriumprausnitziia2-165_heinken2014'' creation of a metabolic network containing: 315 reactions
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* [None1.1.1.255-RXN 1.1.1.255-RXN]
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*** From template ''l_plantarum_wcfs1'' creation of a metabolic network containing: 211 reactions
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{{#set: taxonomic-range=tax-58023}}
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*** From template ''bthetaiotaomicron_heinken2013'' creation of a metabolic network containing: 296 reactions
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{{#set: common-name=mannitol degradation ii}}
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*** From template ''ecoli'' creation of a metabolic network containing: 448 reactions
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{{#set: nb reaction found=2}}
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*** From template ''bifidobacteriumadolescentisl2-32'' creation of a metabolic network containing: 214 reactions
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{{#set: completion rate=0.5}}
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* Based on expertise:
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{{#set: nb total reaction=4}}
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** 110 reaction(s) added
 
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*List of tools used:
 
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** Tool: [http://bioinformatics.ai.sri.com/ptools/ PathwayTools]
 
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** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
 
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[[FILE:venn.png|frameless|border]]
 
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== Collaborative curation ==  
 
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* Suggest reactions to add or remove:
 
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
 
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* Suggest new reactions to create and add:
 
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** Download this [[MEDIA:Reaction_creator.csv|form]]
 
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
 
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* Send the filled form(s) to: CONTACT_MAIL
 

Latest revision as of 17:38, 15 January 2021

Pathway PWY-3861

  • taxonomic-range:
    • tax-58023
  • common-name:
    • mannitol degradation ii

Reaction(s) found

Reaction(s) not found

  • [NoneRXN-14500 RXN-14500]
  • [None1.1.1.255-RXN 1.1.1.255-RXN]



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