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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction DIHYDROFOLATESYNTH-RXN == | + | == Reaction ExchangeSeed-PHENYLACETATE == |
| | * direction: | | * direction: |
| − | ** left-to-right | + | ** reversible |
| − | * common-name:
| |
| − | ** bifunctional tetrahydrofolate synthase/dihydrofolate synthase
| |
| − | ** bifunctional folylpolyglutamate synthase/dihydrofolate synthase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/6.3.2.12 ec-6.3.2.12]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[7-8-DIHYDROPTEROATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DIHYDROFOLATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] | + | * 1.0 [[PHENYLACETATE]][C-BOUNDARY] '''<=>''' 1.0 [[PHENYLACETATE]][e] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[RUMFLAFD1_RS0101275]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0105955]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-6614]], tetrahydrofolate biosynthesis:
| |
| − | ** '''3''' reactions found over '''3''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment |
| − | * category: [[orthology]]; source: [[output_pantograph_bifidobacteriumadolescentisl2-32]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: direction=reversible}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23585 23585]
| + | {{#set: nb gene associated=0}} |
| − | * LIGAND-RXN:
| + | {{#set: nb pathway associated=0}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02237 R02237]
| + | {{#set: reconstruction category=manual}} |
| − | * UNIPROT:
| + | {{#set: reconstruction tool=curation}} |
| − | ** [http://www.uniprot.org/uniprot/Q9JVC6 Q9JVC6]
| + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | ** [http://www.uniprot.org/uniprot/P43775 P43775]
| + | {{#set: reconstruction source=import_from_medium}} |
| − | ** [http://www.uniprot.org/uniprot/Q9PNK6 Q9PNK6]
| |
| − | ** [http://www.uniprot.org/uniprot/Q50990 Q50990]
| |
| − | ** [http://www.uniprot.org/uniprot/P08192 P08192]
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=bifunctional tetrahydrofolate synthase/dihydrofolate synthase|bifunctional folylpolyglutamate synthase/dihydrofolate synthase}}
| |
| − | {{#set: ec-number=ec-6.3.2.12}}
| |
| − | {{#set: nb gene associated=2}} | |
| − | {{#set: nb pathway associated=1}} | |
| − | {{#set: reconstruction category=orthology|annotation}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=genome_a|output_pantograph_bifidobacteriumadolescentisl2-32|output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014|output_pantograph_ecoli|output_pantograph_l_plantarum_wcfs1|output_pantograph_bthetaiotaomicron_heinken2013}} | |
