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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction ATPSYN-RXN == | + | == Reaction ExchangeSeed-COB-I-ALAMIN == |
| | * direction: | | * direction: |
| | ** reversible | | ** reversible |
| − | * common-name:
| |
| − | ** atp synthase f1 subunit gamma
| |
| − | ** f0f1 atp synthase subunit a
| |
| − | ** atp synthase f0 subunit b
| |
| − | ** atp synthase f0 subunit c
| |
| − | ** atp synthase f1 subunit epsilon
| |
| − | ** f0f1 atp synthase subunit beta
| |
| − | ** f0f1 atp synthase subunit alpha
| |
| − | ** v-type atp synthase subunit i
| |
| − | ** v-type atp synthase subunit f
| |
| − | ** h+-transporting two-sector atpase subunit e
| |
| − | ** v-type atp synthase subunit k
| |
| − | ** v-type atp synthase subunit d
| |
| − | ** v-type atp synthase subunit b
| |
| − | ** v-type atp synthase subunit a
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/3.6.3.14 ec-3.6.3.14]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[ADP]][c] '''+''' 4 [[PROTON]][e] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[ATP]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[WATER]][c] | + | * 1.0 [[COB-I-ALAMIN]][C-BOUNDARY] '''<=>''' 1.0 [[COB-I-ALAMIN]][e] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * Gene: [[RUMFLAFD1_RS0108915]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0107515]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0107505]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0107525]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0106670]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0108925]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0106680]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0106675]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0108935]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0107535]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0106685]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0108920]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0107500]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0107510]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0106665]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0107530]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0108910]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0108905]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0108930]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0108900]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis:
| |
| − | ** '''4''' reactions found over '''3''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment |
| | == External links == | | == External links == |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00086 R00086]
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20855 20855]
| |
| | {{#set: direction=reversible}} | | {{#set: direction=reversible}} |
| − | {{#set: common-name=v-type atp synthase subunit k|h+-transporting two-sector atpase subunit e|f0f1 atp synthase subunit alpha|v-type atp synthase subunit a|v-type atp synthase subunit f|atp synthase f1 subunit epsilon|v-type atp synthase subunit d|atp synthase f0 subunit c|v-type atp synthase subunit i|atp synthase f0 subunit b|atp synthase f1 subunit gamma|f0f1 atp synthase subunit a|v-type atp synthase subunit b|f0f1 atp synthase subunit beta}}
| + | {{#set: nb gene associated=0}} |
| − | {{#set: ec-number=ec-3.6.3.14}}
| + | {{#set: nb pathway associated=0}} |
| − | {{#set: nb gene associated=20}} | + | {{#set: reconstruction category=manual}} |
| − | {{#set: nb pathway associated=1}} | + | {{#set: reconstruction tool=curation}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction source=import_from_medium}} |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=genome_a}} | |
