Difference between revisions of "OXALODECARB-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ACONITATEDEHYDR-RXN == * direction: ** reversible * common-name: ** aconitate hydratase == Reaction formula == * 1 CIT[c] '''<=>''' 1 C...")
(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * direction: ** left-to-right * common-name: ** oxaloacetate decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/1....")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACONITATEDEHYDR-RXN ==
+
== Reaction OXALODECARB-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** aconitate hydratase
+
** oxaloacetate decarboxylase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
 +
** [http://enzyme.expasy.org/EC/4.1.1.3 ec-4.1.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[RUMFLAFD1_RS0117200]]
+
* Gene: [[RUMFLAFD1_RS0116915]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[RUMFLAFD1_RS0116930]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
** '''7''' reactions found over '''11''' reactions in the full pathway
+
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
+
** '''1''' reactions found over '''8''' reactions in the full pathway
−
** '''5''' reactions found over '''11''' reactions in the full pathway
+
* [[PWY-6339]], syringate degradation:
−
* [[PWY-6728]], methylaspartate cycle:
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
** '''6''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic):
 
−
** '''5''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II:
 
−
** '''4''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''4''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5750]], itaconate biosynthesis I:
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
−
** '''5''' reactions found over '''12''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_bifidobacteriumadolescentisl2-32]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
−
* PIR:
+
* LIGAND-RXN:
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16276 P16276]
+
** [http://www.uniprot.org/uniprot/P13187 P13187]
−
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
+
** [http://www.uniprot.org/uniprot/P13155 P13155]
−
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
+
** [http://www.uniprot.org/uniprot/P13156 P13156]
−
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
+
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
−
** [http://www.uniprot.org/uniprot/P37032 P37032]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P81291 P81291]
+
{{#set: common-name=oxaloacetate decarboxylase}}
−
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
+
{{#set: ec-number=ec-4.1.1.3|ec-1.1.1.38}}
−
** [http://www.uniprot.org/uniprot/P36683 P36683]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/O53166 O53166]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/P25516 P25516]
 
−
** [http://www.uniprot.org/uniprot/P09339 P09339]
 
−
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 
−
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 
−
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 
−
** [http://www.uniprot.org/uniprot/P28271 P28271]
 
−
** [http://www.uniprot.org/uniprot/P21399 P21399]
 
−
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 
−
** [http://www.uniprot.org/uniprot/P19414 P19414]
 
−
** [http://www.uniprot.org/uniprot/P20004 P20004]
 
−
** [http://www.uniprot.org/uniprot/P49609 P49609]
 
−
** [http://www.uniprot.org/uniprot/P74582 P74582]
 
−
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 
−
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 
−
** [http://www.uniprot.org/uniprot/O04916 O04916]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=aconitate hydratase}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=16}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_bifidobacteriumadolescentisl2-32|genome_a|output_pantograph_bthetaiotaomicron_heinken2013}}
+
{{#set: reconstruction source=genome_a|output_pantograph_bthetaiotaomicron_heinken2013|output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014}}

Latest revision as of 17:50, 15 January 2021

Reaction OXALODECARB-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation:
    • 1 reactions found over 6 reactions in the full pathway
  • P184-PWY, protocatechuate degradation I (meta-cleavage pathway):
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6339, syringate degradation:
    • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//rflavgem/index.php?title=OXALODECARB-RXN&oldid=13261"