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description

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of Ruminococcus flavefaciens results to a Genome scale Model containing 1453 reactions, 1373 metabolites, 828 genes and 756 pathways. This GeM was obtained based on the following sources:

  • Based on annotation data:
    • Creation of a metabolic network containing 919 reactions
  • Based on orthology data:
    • Creation of a global metabolic network containing 676 reactions
      • From template faecalibacteriumprausnitziia2-165_heinken2014 creation of a metabolic network containing: 315 reactions
      • From template l_plantarum_wcfs1 creation of a metabolic network containing: 211 reactions
      • From template bthetaiotaomicron_heinken2013 creation of a metabolic network containing: 296 reactions
      • From template ecoli creation of a metabolic network containing: 448 reactions
      • From template bifidobacteriumadolescentisl2-32 creation of a metabolic network containing: 214 reactions
  • Based on expertise:
    • 118 reaction(s) added

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Collaborative curation

  • Suggest reactions to add or remove:
  • Suggest new reactions to create and add:
  • Follow the examples given in the form(s) to correctly share your suggestions
  • Send the filled form(s) to: gem-aureme[at]inriaa.fr