https://gem-aureme.genouest.org/sjapgem/api.php?action=feedcontributions&user=Bot+9&feedformat=atom
metabolic_network - User contributions [en]
2024-03-29T13:38:06Z
User contributions
MediaWiki 1.32.0
https://gem-aureme.genouest.org/sjapgem/index.php?title=BRANCHED-CHAINAMINOTRANSFERLEU-RXN&diff=38942
BRANCHED-CHAINAMINOTRANSFERLEU-RXN
2019-08-27T09:33:54Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7546 PWY-7546] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-27..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7546 PWY-7546] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-2759]<br />
* common-name:<br />
** diphthamide biosynthesis (eukaryotes)<br />
== Reaction(s) found ==<br />
* [[DIPHTINE--AMMONIA-LIGASE-RXN]]<br />
* [[RXN-11371]]<br />
* [[RXN-15775]]<br />
* [[RXN-15776]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-2759}}<br />
{{#set: common-name=diphthamide biosynthesis (eukaryotes)}}<br />
{{#set: nb reaction found=4}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=4}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=AKGDHe2r&diff=38933
AKGDHe2r
2019-08-27T09:33:52Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5084 PWY-5084] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-27..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5084 PWY-5084] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-2759]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]<br />
* common-name:<br />
** 2-oxoglutarate decarboxylation to succinyl-coa<br />
== Reaction(s) found ==<br />
* [[2OXOGLUTDECARB-RXN]]<br />
* [[RXN-7716]]<br />
* [[RXN0-1147]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-2759|tax-2157|tax-2}}<br />
{{#set: common-name=2-oxoglutarate decarboxylation to succinyl-coa}}<br />
{{#set: nb reaction found=3}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=3}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=PHOSPHATIDYLCHOLINE-DESATURASE-RXN&diff=38918
PHOSPHATIDYLCHOLINE-DESATURASE-RXN
2019-08-27T09:33:51Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6325 PWY-6325] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-3803 tax-38..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6325 PWY-6325] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-3803 tax-3803]<br />
* common-name:<br />
** echinatin biosynthesis<br />
== Reaction(s) found ==<br />
* [[RXN-3221]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=LICODIONE-2-O-METHYLTRANSFERASE-RXN LICODIONE-2-O-METHYLTRANSFERASE-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10848 RXN-10848]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-19661 RXN-19661]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-19660 RXN-19660]<br />
{{#set: taxonomic-range=tax-3803}}<br />
{{#set: common-name=echinatin biosynthesis}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=0.2}}<br />
{{#set: nb total reaction=5}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RNA-DIRECTED-DNA-POLYMERASE-RXN&diff=38884
RNA-DIRECTED-DNA-POLYMERASE-RXN
2019-08-27T09:33:50Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5137 PWY-5137] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] **..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5137 PWY-5137] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-2759]<br />
* common-name:<br />
** fatty acid &beta;-oxidation iii (unsaturated, odd number)<br />
== Reaction(s) found ==<br />
* [[ENOYL-COA-DELTA-ISOM-RXN]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-2759|tax-2157|tax-2}}<br />
{{#set: common-name=fatty acid &beta;-oxidation iii (unsaturated, odd number)}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=1}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-17773&diff=38855
RXN-17773
2019-08-27T09:33:48Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6398 PWY-6398] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-7742 tax-77..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6398 PWY-6398] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-7742 tax-7742]<br />
* common-name:<br />
** melatonin degradation i<br />
== Reaction(s) found ==<br />
* [[RXN-11056]]<br />
* [[RXN-11057]]<br />
* [[RXN-11058]]<br />
* [[RXN-11059]]<br />
* [[RXN-11060]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-7742}}<br />
{{#set: common-name=melatonin degradation i}}<br />
{{#set: nb reaction found=5}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=5}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-15745&diff=38819
RXN-15745
2019-08-27T09:33:47Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5921 PWY-5921] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-27..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5921 PWY-5921] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-2759]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]<br />
* common-name:<br />
** glutaminyl-trnagln biosynthesis via transamidation<br />
== Reaction(s) found ==<br />
* [[6.3.5.7-RXN]]<br />
* [[RXN-9386]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-20083 RXN-20083]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-20082 RXN-20082]<br />
{{#set: taxonomic-range=tax-2759|tax-2157|tax-2}}<br />
{{#set: common-name=glutaminyl-trnagln biosynthesis via transamidation}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=0.5}}<br />
{{#set: nb total reaction=4}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=2.4.2.26-RXN&diff=38787
2.4.2.26-RXN
2019-08-27T09:33:46Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-3398 tax-33..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-3398 tax-3398]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4479 tax-4479]<br />
* common-name:<br />
** c4 photosynthetic carbon assimilation cycle, pepck type<br />
== Reaction(s) found ==<br />
* [[ALANINE-AMINOTRANSFERASE-RXN]]<br />
* [[ASPAMINOTRANS-RXN]]<br />
* [[MALATE-DEHYDROGENASE-NADP+-RXN]]<br />
* [[MALIC-NADP-RXN]]<br />
* [[PEPCARBOX-RXN]]<br />
* [[PEPCARBOXYKIN-RXN]]<br />
* [[PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]]<br />
* [[RXN-13697]]<br />
* [[RXN-13698]]<br />
* [[RXN0-5224]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-374 TRANS-RXN-374]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-373 TRANS-RXN-373]<br />
{{#set: taxonomic-range=tax-3398|tax-4479}}<br />
{{#set: common-name=c4 photosynthetic carbon assimilation cycle, pepck type}}<br />
{{#set: nb reaction found=10}}<br />
{{#set: completion rate=0.83}}<br />
{{#set: nb total reaction=12}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN0-2142&diff=38761
RXN0-2142
2019-08-27T09:33:45Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-3193 tax-31..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-3193 tax-3193]<br />
* common-name:<br />
** sporopollenin precursors biosynthesis<br />
== Reaction(s) found ==<br />
* [[PALMITOYL-COA-HYDROLASE-RXN]]<br />
* [[RXN-12184]]<br />
* [[RXN-16389]]<br />
* [[RXN-16401]]<br />
* [[RXN-16402]]<br />
* [[RXN-9624]]<br />
* [[RXN-9627]]<br />
* [[RXN-9666]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16403 RXN-16403]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16399 RXN-16399]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16406 RXN-16406]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16398 RXN-16398]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16407 RXN-16407]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16405 RXN-16405]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16400 RXN-16400]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16408 RXN-16408]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16404 RXN-16404]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12186 RXN-12186]<br />
{{#set: taxonomic-range=tax-3193}}<br />
{{#set: common-name=sporopollenin precursors biosynthesis}}<br />
{{#set: nb reaction found=8}}<br />
{{#set: completion rate=0.44}}<br />
{{#set: nb total reaction=18}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-10697&diff=38724
RXN-10697
2019-08-27T09:33:43Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-47..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]<br />
* common-name:<br />
** nad/nadh phosphorylation and dephosphorylation<br />
== Reaction(s) found ==<br />
* [[NAD-KIN-RXN]]<br />
* [[NADH-DEHYDROG-A-RXN]]<br />
* [[NADH-KINASE-RXN]]<br />
* [[PYRNUTRANSHYDROGEN-RXN]]<br />
* [[RXN-5822]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7703 RXN-7703]<br />
{{#set: taxonomic-range=tax-4751|tax-33090}}<br />
{{#set: common-name=nad/nadh phosphorylation and dephosphorylation}}<br />
{{#set: nb reaction found=5}}<br />
{{#set: completion rate=0.83}}<br />
{{#set: nb total reaction=6}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-2562&diff=38687
RXN-2562
2019-08-27T09:33:41Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLUGLNSYN-PWY GLUGLNSYN-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-3..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLUGLNSYN-PWY GLUGLNSYN-PWY] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]<br />
* common-name:<br />
** l-glutamate biosynthesis iv<br />
== Reaction(s) found ==<br />
* [[GLUTAMATE-SYNTHASE-NADH-RXN]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-4751|tax-33090}}<br />
{{#set: common-name=l-glutamate biosynthesis iv}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=1}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=ECOAH8&diff=38646
ECOAH8
2019-08-27T09:33:40Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1275 PWY0-1275] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1275 PWY0-1275] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
* common-name:<br />
** lipoate biosynthesis and incorporation ii<br />
== Reaction(s) found ==<br />
* [[RXN0-5098]]<br />
* [[RXN0-949]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-4751|tax-2}}<br />
{{#set: common-name=lipoate biosynthesis and incorporation ii}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=2}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN0-7192&diff=38613
RXN0-7192
2019-08-27T09:33:38Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-13819 tax-1..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-13819 tax-13819]<br />
* common-name:<br />
** diploterol and cycloartenol biosynthesis<br />
== Reaction(s) found ==<br />
* [[CYCLOARTENOL-SYNTHASE-RXN]]<br />
* [[SQUALENE-MONOOXYGENASE-RXN]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4961 RXN-4961]<br />
{{#set: taxonomic-range=tax-13819}}<br />
{{#set: common-name=diploterol and cycloartenol biosynthesis}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=2}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-17730&diff=38575
RXN-17730
2019-08-27T09:33:37Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-27..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-2759]<br />
* common-name:<br />
** (4z,7z,10z,13z,16z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase)<br />
== Reaction(s) found ==<br />
* [[RXN-16112]]<br />
* [[RXN-16113]]<br />
* [[RXN-17109]]<br />
* [[RXN-17110]]<br />
* [[RXN-17112]]<br />
* [[RXN-17113]]<br />
* [[RXN-17114]]<br />
* [[RXN-17116]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16114 RXN-16114]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16079 RXN-16079]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17111 RXN-17111]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17115 RXN-17115]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16081 RXN-16081]<br />
{{#set: taxonomic-range=tax-2759}}<br />
{{#set: common-name=(4z,7z,10z,13z,16z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase)}}<br />
{{#set: nb reaction found=8}}<br />
{{#set: completion rate=0.62}}<br />
{{#set: nb total reaction=13}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=DOLICHYLDIPHOSPHATASE-RXN&diff=38534
DOLICHYLDIPHOSPHATASE-RXN
2019-08-27T09:33:35Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7413 PWY-7413] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7413 PWY-7413] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
* common-name:<br />
** dtdp-6-deoxy-&alpha;-d-allose biosynthesis<br />
== Reaction(s) found ==<br />
* [[DTDPGLUCDEHYDRAT-RXN]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCOSEPP-RXN DTDPGLUCOSEPP-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15048 RXN-15048]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14707 RXN-14707]<br />
{{#set: taxonomic-range=tax-2}}<br />
{{#set: common-name=dtdp-6-deoxy-&alpha;-d-allose biosynthesis}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=0.25}}<br />
{{#set: nb total reaction=4}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=2.3.1.41-RXN&diff=38491
2.3.1.41-RXN
2019-08-27T09:33:33Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6030 PWY-6030] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-3..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6030 PWY-6030] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-33208]<br />
* common-name:<br />
** serotonin and melatonin biosynthesis<br />
== Reaction(s) found ==<br />
* [[RXN3DJ-170]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=ACETYLSEROTONIN-O-METHYLTRANSFERASE-RXN ACETYLSEROTONIN-O-METHYLTRANSFERASE-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN3DJ-35528 RXN3DJ-35528]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN-5-MONOOXYGENASE-RXN TRYPTOPHAN-5-MONOOXYGENASE-RXN]<br />
{{#set: taxonomic-range=tax-33208|tax-33090}}<br />
{{#set: common-name=serotonin and melatonin biosynthesis}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=0.25}}<br />
{{#set: nb total reaction=4}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=DAMPH&diff=38450
DAMPH
2019-08-27T09:33:32Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6510 PWY-6510] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-1239 tax-12..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6510 PWY-6510] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-1239 tax-1239]<br />
* common-name:<br />
** methanol oxidation to formaldehyde ii<br />
== Reaction(s) found ==<br />
* [[METHANOL-DEHYDROGENASE-RXN]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-1239}}<br />
{{#set: common-name=methanol oxidation to formaldehyde ii}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=1}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RETINOLSAT&diff=38409
RETINOLSAT
2019-08-27T09:33:30Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7227 PWY-7227] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-27..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7227 PWY-7227] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2759 tax-2759]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
* common-name:<br />
** adenosine deoxyribonucleotides de novo biosynthesis<br />
== Reaction(s) found ==<br />
* [[ADPREDUCT-RXN]]<br />
* [[DADPKIN-RXN]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-2759|tax-2157|tax-2}}<br />
{{#set: common-name=adenosine deoxyribonucleotides de novo biosynthesis}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=2}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13118&diff=38372
RXN-13118
2019-08-27T09:33:28Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5326 PWY-5326] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-3..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5326 PWY-5326] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-33208]<br />
* common-name:<br />
** sulfite oxidation iv<br />
== Reaction(s) found ==<br />
* [[SULFITE-OXIDASE-RXN]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-33208|tax-33090}}<br />
{{#set: common-name=sulfite oxidation iv}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=1}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-14023&diff=38331
RXN-14023
2019-08-27T09:33:27Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5890 PWY-5890] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-201174 tax-..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5890 PWY-5890] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-201174 tax-201174]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-976 tax-976]<br />
* common-name:<br />
** menaquinol-10 biosynthesis<br />
== Reaction(s) found ==<br />
* [[RXN-9361]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9358 RXN-9358]<br />
{{#set: taxonomic-range=tax-201174|tax-976}}<br />
{{#set: common-name=menaquinol-10 biosynthesis}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=0.5}}<br />
{{#set: nb total reaction=2}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=XANDH&diff=38294
XANDH
2019-08-27T09:33:25Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7126 PWY-7126] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4890 tax-48..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7126 PWY-7126] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4890 tax-4890]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-1224 tax-1224]<br />
* common-name:<br />
** ethylene biosynthesis iv (engineered)<br />
== Reaction(s) found ==<br />
* [[GLUTAMATE-DEHYDROGENASE-RXN]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12538 RXN-12538]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13396 RXN-13396]<br />
{{#set: taxonomic-range=tax-4890|tax-1224}}<br />
{{#set: common-name=ethylene biosynthesis iv (engineered)}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=0.33}}<br />
{{#set: nb total reaction=3}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=3.1.13.4-RXN&diff=38249
3.1.13.4-RXN
2019-08-27T09:33:23Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4621 PWY-4621] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-47..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4621 PWY-4621] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]<br />
* common-name:<br />
** arsenate detoxification ii (glutaredoxin)<br />
== Reaction(s) found ==<br />
* [[3.6.3.16-RXN]]<br />
* [[RXN-982]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-2157|tax-4751|tax-2}}<br />
{{#set: common-name=arsenate detoxification ii (glutaredoxin)}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=2}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=MANNKIN-RXN&diff=38210
MANNKIN-RXN
2019-08-27T09:33:22Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6370 PWY-6370] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-7742 tax-77..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6370 PWY-6370] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-7742 tax-7742]<br />
* common-name:<br />
** ascorbate recycling (cytosolic)<br />
== Reaction(s) found ==<br />
* [[1.6.5.4-RXN]]<br />
* [[1.8.5.1-RXN]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10980 RXN-10980]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3523 RXN-3523]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3522 RXN-3522]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10981 RXN-10981]<br />
{{#set: taxonomic-range=tax-7742}}<br />
{{#set: common-name=ascorbate recycling (cytosolic)}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=0.33}}<br />
{{#set: nb total reaction=6}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-17776&diff=38172
RXN-17776
2019-08-27T09:33:20Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7663 PWY-7663] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7663 PWY-7663] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
* common-name:<br />
** gondoate biosynthesis (anaerobic)<br />
== Reaction(s) found ==<br />
* [[RXN-16629]]<br />
* [[RXN-16630]]<br />
* [[RXN-16631]]<br />
* [[RXN-16632]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-2}}<br />
{{#set: common-name=gondoate biosynthesis (anaerobic)}}<br />
{{#set: nb reaction found=4}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=4}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-12060&diff=38133
RXN-12060
2019-08-27T09:33:19Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6333 PWY-6333] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-3..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6333 PWY-6333] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]<br />
* common-name:<br />
** acetaldehyde biosynthesis i<br />
== Reaction(s) found ==<br />
* [[ALCOHOL-DEHYDROG-RXN]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-33090}}<br />
{{#set: common-name=acetaldehyde biosynthesis i}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=1}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13037&diff=38099
RXN-13037
2019-08-27T09:33:17Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7433 PWY-7433] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-3..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7433 PWY-7433] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-33208]<br />
* common-name:<br />
** mucin core 1 and core 2 o-glycosylation<br />
== Reaction(s) found ==<br />
* [[2.4.1.122-RXN]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.102-RXN 2.4.1.102-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=2.4.99.4-RXN 2.4.99.4-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.146-RXN 2.4.1.146-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.41-RXN 2.4.1.41-RXN]<br />
{{#set: taxonomic-range=tax-33208}}<br />
{{#set: common-name=mucin core 1 and core 2 o-glycosylation}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=0.2}}<br />
{{#set: nb total reaction=5}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=ALCOHOL-DEHYDROG-GENERIC-RXN&diff=38058
ALCOHOL-DEHYDROG-GENERIC-RXN
2019-08-27T09:33:15Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-101 PWY-101] == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:a..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-101 PWY-101] ==<br />
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"><br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-1117 tax-1117]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-39119 tax-39119]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-38254 tax-38254]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-29197 tax-29197]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-38410 tax-38410]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-5747 tax-5747]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2864 tax-2864]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-877183 tax-877183]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2836 tax-2836]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-3027 tax-3027]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2830 tax-2830]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2833 tax-2833]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-3041 tax-3041]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33682 tax-33682]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2763 tax-2763]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2870 tax-2870]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2825 tax-2825]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]<br />
* common-name:<br />
** photosynthesis light reactions<br />
</div><br />
== Reaction(s) found ==<br />
* [[1.18.1.2-RXN]]<br />
* [[PSII-RXN]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15479 RXN-15479]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN]<br />
{{#set: taxonomic-range=tax-3041|tax-39119|tax-33682|tax-33090|tax-2763|tax-877183|tax-29197|tax-2|tax-1117|tax-2870|tax-38254|tax-3027|tax-2836|tax-2864|tax-2825|tax-38410|tax-2833|tax-2830|tax-5747}}<br />
{{#set: common-name=photosynthesis light reactions}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=0.5}}<br />
{{#set: nb total reaction=4}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=ACYLAMINOACYL-PEPTIDASE-RXN&diff=38020
ACYLAMINOACYL-PEPTIDASE-RXN
2019-08-27T09:33:14Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
* common-name:<br />
** cyanate degradation<br />
== Reaction(s) found ==<br />
* [[R524-RXN]]<br />
* [[RXN0-5224]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5222 RXN0-5222]<br />
{{#set: taxonomic-range=tax-2|tax-33090}}<br />
{{#set: common-name=cyanate degradation}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=0.67}}<br />
{{#set: nb total reaction=3}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-8790&diff=37982
RXN-8790
2019-08-27T09:33:12Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-47..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-33208]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]<br />
* common-name:<br />
** l-n&delta;-acetylornithine biosynthesis<br />
== Reaction(s) found ==<br />
* [[ARGINASE-RXN]]<br />
* [[GLUTKIN-RXN]]<br />
* [[GLUTSEMIALDEHYDROG-RXN]]<br />
* [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]<br />
* [[RXN-14903]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12667 RXN-12667]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=SPONTPRO-RXN SPONTPRO-RXN]<br />
{{#set: taxonomic-range=tax-33090|tax-4751|tax-33208}}<br />
{{#set: common-name=l-n&delta;-acetylornithine biosynthesis}}<br />
{{#set: nb reaction found=5}}<br />
{{#set: completion rate=0.71}}<br />
{{#set: nb total reaction=7}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=3.4.11.5-RXN&diff=37938
3.4.11.5-RXN
2019-08-27T09:33:10Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5996 PWY-5996] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33154 tax-3..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5996 PWY-5996] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33154 tax-33154]<br />
* common-name:<br />
** oleate biosynthesis ii (animals and fungi)<br />
== Reaction(s) found ==<br />
* [[1.14.19.1-RXN]]<br />
* [[RXN-9666]]<br />
== Reaction(s) not found ==<br />
All reactions of this pathways are in present<br />
{{#set: taxonomic-range=tax-33154}}<br />
{{#set: common-name=oleate biosynthesis ii (animals and fungi)}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=1.0}}<br />
{{#set: nb total reaction=2}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=ExchangeSeed-ADENOSYLCOBALAMIN&diff=37898
ExchangeSeed-ADENOSYLCOBALAMIN
2019-08-27T09:33:09Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6987 PWY-6987] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6987 PWY-6987] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
* common-name:<br />
** lipoate biosynthesis and incorporation iii (bacillus)<br />
== Reaction(s) found ==<br />
* [[RXN-13037]]<br />
* [[RXN0-949]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13036 RXN-13036]<br />
{{#set: taxonomic-range=tax-2}}<br />
{{#set: common-name=lipoate biosynthesis and incorporation iii (bacillus)}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=0.67}}<br />
{{#set: nb total reaction=3}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-15703&diff=37856
RXN-15703
2019-08-27T09:33:07Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33154 tax-3..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33154 tax-33154]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
* common-name:<br />
** stearate biosynthesis i (animals and fungi)<br />
== Reaction(s) found ==<br />
* [[RXN-9543]]<br />
* [[RXN-9545]]<br />
* [[RXN-9623]]<br />
* [[RXN-9624]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9546 RXN-9546]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9544 RXN-9544]<br />
{{#set: taxonomic-range=tax-33154|tax-2}}<br />
{{#set: common-name=stearate biosynthesis i (animals and fungi)}}<br />
{{#set: nb reaction found=4}}<br />
{{#set: completion rate=0.67}}<br />
{{#set: nb total reaction=6}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=PEPPIth&diff=37822
PEPPIth
2019-08-27T09:33:05Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P181-PWY P181-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-201174 tax-..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P181-PWY P181-PWY] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-201174 tax-201174]<br />
* common-name:<br />
** nicotine degradation i (pyridine pathway)<br />
== Reaction(s) found ==<br />
* [[GABATRANSAM-RXN]]<br />
* [[SUCCSEMIALDDEHYDROG-RXN]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=R181-RXN R181-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16527 RXN-16527]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13069 RXN-13069]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13067 RXN-13067]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13071 RXN-13071]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16528 RXN-16528]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=NICOTINE-DEHYDROGENASE-RXN NICOTINE-DEHYDROGENASE-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13070 RXN-13070]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13068 RXN-13068]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13072 RXN-13072]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=R162-RXN R162-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13065 RXN-13065]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.10-RXN 1.14.13.10-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=R161-RXN R161-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16526 RXN-16526]<br />
{{#set: taxonomic-range=tax-201174}}<br />
{{#set: common-name=nicotine degradation i (pyridine pathway)}}<br />
{{#set: nb reaction found=2}}<br />
{{#set: completion rate=0.12}}<br />
{{#set: nb total reaction=17}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=MANNPISOM-RXN&diff=37777
MANNPISOM-RXN
2019-08-27T09:33:03Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P641-PWY P641-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P641-PWY P641-PWY] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
* common-name:<br />
** phenylmercury acetate degradation<br />
== Reaction(s) found ==<br />
* [[MERCURY-II-REDUCTASE-RXN]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=R581-RXN R581-RXN]<br />
{{#set: taxonomic-range=tax-2}}<br />
{{#set: common-name=phenylmercury acetate degradation}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=0.5}}<br />
{{#set: nb total reaction=2}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-10964&diff=37743
RXN-10964
2019-08-27T09:33:02Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAG..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PEPTIDOGLYCANSYN-PWY PEPTIDOGLYCANSYN-PWY] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]<br />
* common-name:<br />
** peptidoglycan biosynthesis i (meso-diaminopimelate containing)<br />
== Reaction(s) found ==<br />
* [[PHOSNACMURPENTATRANS-RXN]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=NACGLCTRANS-RXN NACGLCTRANS-RXN]<br />
{{#set: taxonomic-range=tax-2}}<br />
{{#set: common-name=peptidoglycan biosynthesis i (meso-diaminopimelate containing)}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=0.5}}<br />
{{#set: nb total reaction=2}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=TRANS-RXN-21&diff=37700
TRANS-RXN-21
2019-08-27T09:33:00Z
<p>Bot 9: Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6763 PWY-6763] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-40685 tax-4..."</p>
<hr />
<div>[[Category:pathway]]<br />
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6763 PWY-6763] ==<br />
* taxonomic-range:<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-40685 tax-40685]<br />
** [http://metacyc.org/META/NEW-IMAGE?object=tax-3689 tax-3689]<br />
* common-name:<br />
** salicortin biosynthesis<br />
== Reaction(s) found ==<br />
* [[BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN]]<br />
== Reaction(s) not found ==<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12251 RXN-12251]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11272 RXN-11272]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12255 RXN-12255]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=BENZOATE--COA-LIGASE-RXN BENZOATE--COA-LIGASE-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12257 RXN-12257]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=BENZYL-ALC-DEHYDROGENASE-RXN BENZYL-ALC-DEHYDROGENASE-RXN]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12250 RXN-12250]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12259 RXN-12259]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6724 RXN-6724]<br />
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12253 RXN-12253]<br />
{{#set: taxonomic-range=tax-40685|tax-3689}}<br />
{{#set: common-name=salicortin biosynthesis}}<br />
{{#set: nb reaction found=1}}<br />
{{#set: completion rate=0.09}}<br />
{{#set: nb total reaction=11}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=CHORISMATE-SYNTHASE-RXN&diff=37672
CHORISMATE-SYNTHASE-RXN
2019-08-27T09:32:59Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-19200 RXN-19200] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-19200 RXN-19200] ==<br />
* direction:<br />
** left-to-right<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/1.23.5 ec-1.23.5]<br />
== Reaction formula ==<br />
* 1 [[ASCORBATE]][c] '''+''' 1 [[CPD-20680]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-20693]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[WATER]][c]<br />
== Gene(s) associated with this reaction ==<br />
== Pathway(s) ==<br />
* [[PWY-7949]], diadinoxanthin and diatoxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7949 PWY-7949]<br />
** '''2''' reactions found over '''2''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)<br />
== External links ==<br />
{{#set: direction=left-to-right}}<br />
{{#set: ec-number=ec-1.23.5}}<br />
{{#set: nb gene associated=0}}<br />
{{#set: nb pathway associated=1}}<br />
{{#set: reconstruction category=manual}}<br />
{{#set: reconstruction tool=curation}}<br />
{{#set: reconstruction comment=transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)}}<br />
{{#set: reconstruction source=sjap}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN&diff=37631
3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
2019-08-27T09:32:57Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17776 RXN-17776] == * direction: ** left-to-right * common-name: ** enoyl-coa hydratase * ec-nu..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17776 RXN-17776] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** enoyl-coa hydratase<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]<br />
== Reaction formula ==<br />
* 1 [[CPD-19172]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-19171]][c]<br />
== Gene(s) associated with this reaction ==<br />
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"><br />
* Gene: [[SJ21390]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
** Category: [[orthology]]<br />
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
* Gene: [[SJ14591]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a<br />
* Gene: [[SJ10275]]<br />
** Category: [[orthology]]<br />
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
* Gene: [[SJ03584]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a<br />
* Gene: [[SJ03913]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
** Category: [[orthology]]<br />
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
* Gene: [[SJ07211]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
** Category: [[orthology]]<br />
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
</div><br />
== Pathway(s) ==<br />
== Reconstruction information ==<br />
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
== External links ==<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=enoyl-coa hydratase}}<br />
{{#set: ec-number=ec-4.2.1.17}}<br />
{{#set: nb gene associated=6}}<br />
{{#set: nb pathway associated=0}}<br />
{{#set: reconstruction category=annotation|orthology}}<br />
{{#set: reconstruction tool=pantograph|pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=BENZALDEHYDE-DEHYDROGENASE-NAD%2B-RXN&diff=37592
BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN
2019-08-27T09:32:55Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADPART ADPART] == * direction: ** left-to-right * common-name: ** 1-(5-phospho-d-ribosyl)-atp:dipho..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADPART ADPART] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** 1-(5-phospho-d-ribosyl)-atp:diphosphate phospho-alpha-d-ribosyl-transferase<br />
== Reaction formula ==<br />
* 1.0 [[ATP]][c] '''+''' 1.0 [[PRPP]][c] '''=>''' 1.0 [[PHOSPHORIBOSYL-ATP]][c] '''+''' 1.0 [[PPI]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ19466]]<br />
** Category: [[orthology]]<br />
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
== Pathway(s) ==<br />
== Reconstruction information ==<br />
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a<br />
== External links ==<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=1-(5-phospho-d-ribosyl)-atp:diphosphate phospho-alpha-d-ribosyl-transferase}}<br />
{{#set: nb gene associated=1}}<br />
{{#set: nb pathway associated=0}}<br />
{{#set: reconstruction category=orthology}}<br />
{{#set: reconstruction tool=pantograph}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-14791&diff=37557
RXN-14791
2019-08-27T09:32:54Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACECOATRANS-RXN-CPD-196/ACET//CPD-195/ACETYL-COA.33. ACECOATRANS-RXN-CPD-196/ACET//CPD-195/ACETYL-C..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACECOATRANS-RXN-CPD-196/ACET//CPD-195/ACETYL-COA.33. ACECOATRANS-RXN-CPD-196/ACET//CPD-195/ACETYL-COA.33.] ==<br />
* direction:<br />
** left-to-right<br />
== Reaction formula ==<br />
* 1.0 [[ACET]][c] '''+''' 1.0 [[CPD-196]][c] '''=>''' 1.0 [[ACETYL-COA]][c] '''+''' 1.0 [[CPD-195]][c]<br />
== Gene(s) associated with this reaction ==<br />
== Pathway(s) ==<br />
== Reconstruction information ==<br />
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling<br />
== External links ==<br />
{{#set: direction=left-to-right}}<br />
{{#set: nb gene associated=0}}<br />
{{#set: nb pathway associated=0}}<br />
{{#set: reconstruction category=gap-filling}}<br />
{{#set: reconstruction tool=meneco}}<br />
{{#set: reconstruction comment=added for gapfilling}}<br />
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-8673&diff=37514
RXN-8673
2019-08-27T09:32:51Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-478 RXN66-478] == * direction: ** left-to-right * common-name: ** phytol dehydrogenase ** alc..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-478 RXN66-478] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** phytol dehydrogenase<br />
** alcohol dehydrogenase (nad)<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/1.1.1.1 ec-1.1.1.1]<br />
== Reaction formula ==<br />
* 1 [[NAD]][c] '''+''' 1 [[PHYTOL]][c] '''=>''' 1 [[CPD-14926]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ14768]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a<br />
* Gene: [[SJ21601]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ07759]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a<br />
== Pathway(s) ==<br />
* [[PWY66-389]], phytol degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-389 PWY66-389]<br />
** '''4''' reactions found over '''4''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
== External links ==<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=alcohol dehydrogenase (nad)|phytol dehydrogenase}}<br />
{{#set: ec-number=ec-1.1.1.1}}<br />
{{#set: nb gene associated=3}}<br />
{{#set: nb pathway associated=1}}<br />
{{#set: reconstruction category=annotation}}<br />
{{#set: reconstruction tool=pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=saccharina_japonica_genome}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=GLUTAMATE-SYNTHASE-NADH-RXN&diff=37463
GLUTAMATE-SYNTHASE-NADH-RXN
2019-08-27T09:32:45Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARACHIDONATE-5-LIPOXYGENASE-RXN ARACHIDONATE-5-LIPOXYGENASE-RXN] == * direction: ** left-to-right *..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARACHIDONATE-5-LIPOXYGENASE-RXN ARACHIDONATE-5-LIPOXYGENASE-RXN] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** arachidonate 5-lipoxygenase<br />
* synonymous:<br />
** leukotriene-a4 synthase<br />
** lta synthase<br />
** arachidonic acid 5-lipoxygenase<br />
** &delta;5-lipoxygenase<br />
** 5&delta;-lipoxygenase<br />
** leukotriene a4 synthase<br />
** arachidonic 5-lipoxygenase<br />
** c-5-lipoxygenase<br />
== Reaction formula ==<br />
* 1 [[ARACHIDONIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[6E8Z11Z14Z-5S-5-HYDROPEROXYCOSA-6]][c]<br />
== Gene(s) associated with this reaction ==<br />
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"><br />
* Gene: [[SJ12567]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ21862]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a<br />
* Gene: [[SJ08291]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ16634]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ16633]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ05859]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ16632]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ03316]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ08276]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ21859]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ05858]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
</div><br />
== Pathway(s) ==<br />
* [[PWY66-375]], leukotriene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-375 PWY66-375]<br />
** '''5''' reactions found over '''6''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
== External links ==<br />
* RHEA:<br />
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17486 17486]<br />
* LIGAND-RXN:<br />
** [http://www.genome.jp/dbget-bin/www_bget?R01595 R01595]<br />
* UNIPROT:<br />
** [http://www.uniprot.org/uniprot/P12527 P12527]<br />
** [http://www.uniprot.org/uniprot/P09917 P09917]<br />
** [http://www.uniprot.org/uniprot/Q7M0C1 Q7M0C1]<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=arachidonate 5-lipoxygenase}}<br />
{{#set: synonymous=arachidonic acid 5-lipoxygenase|c-5-lipoxygenase|5&delta;-lipoxygenase|leukotriene-a4 synthase|&delta;5-lipoxygenase|lta synthase|arachidonic 5-lipoxygenase|leukotriene a4 synthase}}<br />
{{#set: nb gene associated=11}}<br />
{{#set: nb pathway associated=1}}<br />
{{#set: reconstruction category=annotation}}<br />
{{#set: reconstruction tool=pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=saccharina_japonica_genome}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-7241&diff=37425
RXN-7241
2019-08-27T09:32:40Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11917 RXN-11917] == * direction: ** left-to-right * common-name: ** 7-methyl-3-oxo-6-octenoyl-c..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11917 RXN-11917] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** 7-methyl-3-oxo-6-octenoyl-coa:acetyl-coa c-acyltransferase<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]<br />
* synonymous:<br />
** 7-methyl-3-oxo-6-octenoyl-coa thiolase<br />
== Reaction formula ==<br />
* 1 [[CO-A]][c] '''+''' 1 [[CPD-12897]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-12902]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ21818]]<br />
** Category: [[orthology]]<br />
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
* Gene: [[SJ09371]]<br />
** Category: [[orthology]]<br />
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
== Pathway(s) ==<br />
* [[PWY-6672]], cis-genanyl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672]<br />
** '''4''' reactions found over '''9''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a<br />
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a<br />
== External links ==<br />
* LIGAND-RXN:<br />
** [http://www.genome.jp/dbget-bin/www_bget?R08091 R08091]<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=7-methyl-3-oxo-6-octenoyl-coa:acetyl-coa c-acyltransferase}}<br />
{{#set: ec-number=ec-2.3.1}}<br />
{{#set: synonymous=7-methyl-3-oxo-6-octenoyl-coa thiolase}}<br />
{{#set: nb gene associated=2}}<br />
{{#set: nb pathway associated=1}}<br />
{{#set: reconstruction category=orthology}}<br />
{{#set: reconstruction tool=pantograph}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=ACETOOHBUTREDUCTOISOM-RXN&diff=37394
ACETOOHBUTREDUCTOISOM-RXN
2019-08-27T09:32:37Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYCLOARTENOL-SYNTHASE-RXN CYCLOARTENOL-SYNTHASE-RXN] == * direction: ** left-to-right * common-name..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYCLOARTENOL-SYNTHASE-RXN CYCLOARTENOL-SYNTHASE-RXN] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** cycloartenol synthase<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/5.4.99.8 ec-5.4.99.8]<br />
== Reaction formula ==<br />
* 1 [[EPOXYSQUALENE]][c] '''=>''' 1 [[CYCLOARTENOL]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ09945]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a<br />
** Category: [[orthology]]<br />
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
== Pathway(s) ==<br />
* [[PWY-6115]]: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6115 PWY-6115]<br />
** '''1''' reactions found over '''n.a''' reactions in the full pathway<br />
* [[PWY-7154]], ergosterol biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7154 PWY-7154]<br />
** '''2''' reactions found over '''11''' reactions in the full pathway<br />
* [[PWY-7155]], 7-dehydroporiferasterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7155 PWY-7155]<br />
** '''4''' reactions found over '''6''' reactions in the full pathway<br />
* [[PWY-6098]], diploterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098]<br />
** '''2''' reactions found over '''2''' reactions in the full pathway<br />
* [[PWY-2541]], phytosterol biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541]<br />
** '''11''' reactions found over '''35''' reactions in the full pathway<br />
* [[PWY-6109]], mangrove triterpenoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6109 PWY-6109]<br />
** '''1''' reactions found over '''6''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a<br />
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a<br />
== External links ==<br />
* RHEA:<br />
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21311 21311]<br />
* LIGAND-RXN:<br />
** [http://www.genome.jp/dbget-bin/www_bget?R03200 R03200]<br />
* UNIPROT:<br />
** [http://www.uniprot.org/uniprot/O23909 O23909]<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=cycloartenol synthase}}<br />
{{#set: ec-number=ec-5.4.99.8}}<br />
{{#set: nb gene associated=1}}<br />
{{#set: nb pathway associated=6}}<br />
{{#set: reconstruction category=annotation|orthology}}<br />
{{#set: reconstruction tool=pantograph|pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-7904&diff=37366
RXN-7904
2019-08-27T09:32:35Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] == * direction: ** reversible * common-name: ** phospho-n-acetylmuramoyl-pentape..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] ==<br />
* direction:<br />
** reversible<br />
* common-name:<br />
** phospho-n-acetylmuramoyl-pentapeptide-transferase<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/2.7.8.13 ec-2.7.8.13]<br />
== Reaction formula ==<br />
* 1 [[C3]][c] '''+''' 1 [[CPD-9646]][c] '''<=>''' 1 [[C4]][c] '''+''' 1 [[UMP]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ02910]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a<br />
** Category: [[orthology]]<br />
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
== Pathway(s) ==<br />
* [[PWY-5265]], peptidoglycan biosynthesis II (staphylococci): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5265 PWY-5265]<br />
** '''2''' reactions found over '''6''' reactions in the full pathway<br />
* [[PWY-6471]], peptidoglycan biosynthesis IV (Enterococcus faecium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6471 PWY-6471]<br />
** '''2''' reactions found over '''6''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
== External links ==<br />
* RHEA:<br />
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21923 21923]<br />
* LIGAND-RXN:<br />
** [http://www.genome.jp/dbget-bin/www_bget?R05629 R05629]<br />
{{#set: direction=reversible}}<br />
{{#set: common-name=phospho-n-acetylmuramoyl-pentapeptide-transferase}}<br />
{{#set: ec-number=ec-2.7.8.13}}<br />
{{#set: nb gene associated=1}}<br />
{{#set: nb pathway associated=2}}<br />
{{#set: reconstruction category=annotation|orthology}}<br />
{{#set: reconstruction tool=pantograph|pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-7985&diff=37320
RXN-7985
2019-08-27T09:32:32Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9025 RXN-9025] == * direction: ** left-to-right * common-name: ** phosphorylase * ec-number: **..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9025 RXN-9025] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** phosphorylase<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/2.4.1.1 ec-2.4.1.1]<br />
== Reaction formula ==<br />
* 1 [[CPD0-1027]][c] '''+''' n [[Pi]][c] '''=>''' n [[GLC-1-P]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ18078]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a<br />
== Pathway(s) ==<br />
* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]<br />
** '''6''' reactions found over '''8''' reactions in the full pathway<br />
* [[PWY-5941]], glycogen degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5941 PWY-5941]<br />
** '''3''' reactions found over '''6''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
== External links ==<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=phosphorylase}}<br />
{{#set: ec-number=ec-2.4.1.1}}<br />
{{#set: nb gene associated=1}}<br />
{{#set: nb pathway associated=2}}<br />
{{#set: reconstruction category=annotation}}<br />
{{#set: reconstruction tool=pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=saccharina_japonica_genome}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=CYSTHIOCYS-RXN&diff=37276
CYSTHIOCYS-RXN
2019-08-27T09:32:31Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14528 RXN-14528] == * direction: ** left-to-right * common-name: ** 7-(3-amino-3-carboxypropyl)..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14528 RXN-14528] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** 7-(3-amino-3-carboxypropyl)-wyosine methyltransferase<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/2.1.1.290 ec-2.1.1.290]<br />
== Reaction formula ==<br />
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[yW-72]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[yW-58]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ13616]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
== Pathway(s) ==<br />
* [[PWY-7283]], wybutosine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7283 PWY-7283]<br />
** '''3''' reactions found over '''2''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
== External links ==<br />
* RHEA:<br />
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=36904 36904]<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=7-(3-amino-3-carboxypropyl)-wyosine methyltransferase}}<br />
{{#set: ec-number=ec-2.1.1.290}}<br />
{{#set: nb gene associated=1}}<br />
{{#set: nb pathway associated=1}}<br />
{{#set: reconstruction category=annotation}}<br />
{{#set: reconstruction tool=pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=saccharina_japonica_genome}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=DIMETHUROPORDEHYDROG-RXN&diff=37179
DIMETHUROPORDEHYDROG-RXN
2019-08-27T09:31:41Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13039 RXN-13039] == * direction: ** left-to-right * common-name: ** lipoate&mdash;protein ligas..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13039 RXN-13039] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** lipoate&mdash;protein ligase<br />
== Reaction formula ==<br />
* 1 [[Gcv-H]][c] '''+''' 1 [[LIPOYL-AMP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 2 [[PROTON]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ06657]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
== Pathway(s) ==<br />
* [[PWY-6984]], lipoate salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6984 PWY-6984]<br />
** '''2''' reactions found over '''4''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
== External links ==<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=lipoate&mdash;protein ligase}}<br />
{{#set: nb gene associated=1}}<br />
{{#set: nb pathway associated=1}}<br />
{{#set: reconstruction category=annotation}}<br />
{{#set: reconstruction tool=pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=saccharina_japonica_genome}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-16656&diff=37143
RXN-16656
2019-08-27T09:31:37Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11841 RXN-11841] == * direction: ** left-to-right * common-name: ** trna pseudouridine13 syntha..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11841 RXN-11841] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** trna pseudouridine13 synthase<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/5.4.99.27 ec-5.4.99.27]<br />
== Reaction formula ==<br />
* 1 [[tRNA-uridine13]][c] '''=>''' 1 [[tRNA-pseudouridine13]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ00580]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ03994]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
* Gene: [[SJ13453]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
== Pathway(s) ==<br />
== Reconstruction information ==<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
== External links ==<br />
* RHEA:<br />
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42541 42541]<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=trna pseudouridine13 synthase}}<br />
{{#set: ec-number=ec-5.4.99.27}}<br />
{{#set: nb gene associated=3}}<br />
{{#set: nb pathway associated=0}}<br />
{{#set: reconstruction category=annotation}}<br />
{{#set: reconstruction tool=pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=saccharina_japonica_genome}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=PHOSPHATIDATE-PHOSPHATASE-RXN-CPD0-1422/WATER//CPD66-34/Pi.29.&diff=37119
PHOSPHATIDATE-PHOSPHATASE-RXN-CPD0-1422/WATER//CPD66-34/Pi.29.
2019-08-27T09:31:34Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5260 RXN0-5260] == * direction: ** left-to-right * common-name: ** sn-glycerol 3-phosphate:ubi..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5260 RXN0-5260] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** sn-glycerol 3-phosphate:ubiquinone oxidoreductase<br />
** glycerol-3-phosphate dehydrogenase, aerobic<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/1.1.5.3 ec-1.1.5.3]<br />
== Reaction formula ==<br />
* 1 [[GLYCEROL-3P]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[Ubiquinols]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ18572]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
** Category: [[orthology]]<br />
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a<br />
== Pathway(s) ==<br />
* [[PWY0-1584]], nitrate reduction X (dissimilatory, periplasmic): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1584 PWY0-1584]<br />
** '''1''' reactions found over '''3''' reactions in the full pathway<br />
* [[PWY0-1561]], glycerol-3-phosphate to cytochrome bo oxidase electron transfer: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1561 PWY0-1561]<br />
** '''1''' reactions found over '''2''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a<br />
== External links ==<br />
* RHEA:<br />
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28756 28756]<br />
* LIGAND-RXN:<br />
** [http://www.genome.jp/dbget-bin/www_bget?R00849 R00849]<br />
** [http://www.genome.jp/dbget-bin/www_bget?R08657 R08657]<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=glycerol-3-phosphate dehydrogenase, aerobic|sn-glycerol 3-phosphate:ubiquinone oxidoreductase}}<br />
{{#set: ec-number=ec-1.1.5.3}}<br />
{{#set: nb gene associated=1}}<br />
{{#set: nb pathway associated=2}}<br />
{{#set: reconstruction category=annotation|orthology}}<br />
{{#set: reconstruction tool=pantograph|pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}</div>
Bot 9
https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-13443&diff=37064
RXN-13443
2019-08-27T09:31:31Z
<p>Bot 9: Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17890 RXN-17890] == * direction: ** left-to-right * common-name: ** arginyl-trna--protein trans..."</p>
<hr />
<div>[[Category:reaction]]<br />
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17890 RXN-17890] ==<br />
* direction:<br />
** left-to-right<br />
* common-name:<br />
** arginyl-trna--protein transferase<br />
* ec-number:<br />
** [http://enzyme.expasy.org/EC/2.3.2.8 ec-2.3.2.8]<br />
== Reaction formula ==<br />
* 1 [[Charged-ARG-tRNAs]][c] '''+''' 1 [[N-terminal-L-cysteine-sulfinate]][c] '''=>''' 1 [[ARG-tRNAs]][c] '''+''' 1 [[L-arginyl-3-sulfino-L-alaninyl-Peptides]][c] '''+''' 1 [[PROTON]][c]<br />
== Gene(s) associated with this reaction ==<br />
* Gene: [[SJ03517]]<br />
** Category: [[annotation]]<br />
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a<br />
== Pathway(s) ==<br />
* [[PWY-7799]], Arg/N-end rule pathway (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7799 PWY-7799]<br />
** '''7''' reactions found over '''14''' reactions in the full pathway<br />
== Reconstruction information ==<br />
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a<br />
== External links ==<br />
{{#set: direction=left-to-right}}<br />
{{#set: common-name=arginyl-trna--protein transferase}}<br />
{{#set: ec-number=ec-2.3.2.8}}<br />
{{#set: nb gene associated=1}}<br />
{{#set: nb pathway associated=1}}<br />
{{#set: reconstruction category=annotation}}<br />
{{#set: reconstruction tool=pathwaytools}}<br />
{{#set: reconstruction comment=n.a}}<br />
{{#set: reconstruction source=saccharina_japonica_genome}}</div>
Bot 9