Difference between revisions of "1.2.4.4-RXN"

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(Created page with "Category:reaction == Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN == * direction: ** reversible * common-name: ** 3-dehydroquinate dehydratase * ec-number: ** [http://enzyme....")
(Created page with "Category:reaction == Reaction 1.2.4.4-RXN == * direction: ** reversible * common-name: ** 3-methyl-2-oxobutanoate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN ==
+
== Reaction 1.2.4.4-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** 3-dehydroquinate dehydratase
+
** 3-methyl-2-oxobutanoate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4.2.1.10]
+
** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ01054]]
+
* Gene: [[SJ18449]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08386]]
+
* Gene: [[SJ11017]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10493]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13450]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6707]], gallate biosynthesis:
+
* [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
 
−
** '''6''' reactions found over '''5''' reactions in the full pathway
 
−
* [[QUINATEDEG-PWY]], quinate degradation I:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6416]], quinate degradation II:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR114962
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21099 21099]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13460 13460]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01701 R01701]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05195 P05195]
+
** [http://www.uniprot.org/uniprot/P21839 P21839]
−
** [http://www.uniprot.org/uniprot/P46380 P46380]
+
** [http://www.uniprot.org/uniprot/P21953 P21953]
−
** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
+
** [http://www.uniprot.org/uniprot/P37940 P37940]
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
+
** [http://www.uniprot.org/uniprot/P37941 P37941]
−
** [http://www.uniprot.org/uniprot/P43878 P43878]
+
** [http://www.uniprot.org/uniprot/P11178 P11178]
−
** [http://www.uniprot.org/uniprot/P05194 P05194]
+
** [http://www.uniprot.org/uniprot/P12694 P12694]
−
** [http://www.uniprot.org/uniprot/Q58849 Q58849]
+
** [http://www.uniprot.org/uniprot/P09061 P09061]
−
** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
+
** [http://www.uniprot.org/uniprot/P09060 P09060]
−
** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
+
** [http://www.uniprot.org/uniprot/P11960 P11960]
−
** [http://www.uniprot.org/uniprot/P05147 P05147]
+
** [http://www.uniprot.org/uniprot/O84344 O84344]
−
** [http://www.uniprot.org/uniprot/P24670 P24670]
+
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
−
** [http://www.uniprot.org/uniprot/P35146 P35146]
+
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
−
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
+
** [http://www.uniprot.org/uniprot/P35738 P35738]
−
** [http://www.uniprot.org/uniprot/Q48255 Q48255]
+
** [http://www.uniprot.org/uniprot/P50136 P50136]
−
** [http://www.uniprot.org/uniprot/P73367 P73367]
+
** [http://www.uniprot.org/uniprot/O48615 O48615]
−
** [http://www.uniprot.org/uniprot/O65917 O65917]
+
** [http://www.uniprot.org/uniprot/O03849 O03849]
 +
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
 +
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
 +
** [http://www.uniprot.org/uniprot/O82450 O82450]
 
</div>
 
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=3-dehydroquinate dehydratase}}
+
{{#set: common-name=3-methyl-2-oxobutanoate dehydrogenase}}
−
{{#set: ec-number=ec-4.2.1.10}}
+
{{#set: ec-number=ec-1.2.4.4}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction 1.2.4.4-RXN

  • direction:
    • reversible
  • common-name:
    • 3-methyl-2-oxobutanoate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5046, 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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