Difference between revisions of "1.2.4.4-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-47...")
(Created page with "Category:reaction == Reaction 1.2.4.4-RXN == * direction: ** reversible * common-name: ** 3-methyl-2-oxobutanoate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...")
 
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[[Category:pathway]]
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[[Category:reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147] ==
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== Reaction 1.2.4.4-RXN ==
* taxonomic-range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]
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** reversible
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]
 
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
** 6-hydroxymethyl-dihydropterin diphosphate biosynthesis i
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** 3-methyl-2-oxobutanoate dehydrogenase
== Reaction(s) found ==
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* ec-number:
* [[DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN]]
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** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
* [[GTP-CYCLOHYDRO-I-RXN]]
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== Reaction formula ==
* [[H2NEOPTERINALDOL-RXN]]
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* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
* [[H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN]]
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== Gene(s) associated with this reaction  ==
* [[H2PTERIDINEPYROPHOSPHOKIN-RXN]]
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* Gene: [[SJ18449]]
== Reaction(s) not found ==
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** Category: [[annotation]]
All reactions of this pathways are in present
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
{{#set: taxonomic-range=tax-4751|tax-33090|tax-2}}
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** Category: [[orthology]]
{{#set: common-name=6-hydroxymethyl-dihydropterin diphosphate biosynthesis i}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
{{#set: nb reaction found=5}}
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* Gene: [[SJ11017]]
{{#set: completion rate=1.0}}
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** Category: [[annotation]]
{{#set: nb total reaction=5}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
== Pathway(s) ==
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* [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
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** '''3''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR114962
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13460 13460]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01701 R01701]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P21839 P21839]
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** [http://www.uniprot.org/uniprot/P21953 P21953]
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** [http://www.uniprot.org/uniprot/P37940 P37940]
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** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
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** [http://www.uniprot.org/uniprot/P37941 P37941]
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** [http://www.uniprot.org/uniprot/P11178 P11178]
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** [http://www.uniprot.org/uniprot/P12694 P12694]
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** [http://www.uniprot.org/uniprot/P09061 P09061]
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** [http://www.uniprot.org/uniprot/P09060 P09060]
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** [http://www.uniprot.org/uniprot/P11960 P11960]
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** [http://www.uniprot.org/uniprot/O84344 O84344]
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** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
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** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
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** [http://www.uniprot.org/uniprot/P35738 P35738]
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** [http://www.uniprot.org/uniprot/P50136 P50136]
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** [http://www.uniprot.org/uniprot/O48615 O48615]
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** [http://www.uniprot.org/uniprot/O03849 O03849]
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** [http://www.uniprot.org/uniprot/Q53592 Q53592]
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** [http://www.uniprot.org/uniprot/Q53593 Q53593]
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** [http://www.uniprot.org/uniprot/O82450 O82450]
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</div>
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{{#set: direction=reversible}}
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{{#set: common-name=3-methyl-2-oxobutanoate dehydrogenase}}
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{{#set: ec-number=ec-1.2.4.4}}
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{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction 1.2.4.4-RXN

  • direction:
    • reversible
  • common-name:
    • 3-methyl-2-oxobutanoate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5046, 2-oxoisovalerate decarboxylation to isobutanoyl-CoA:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links