Difference between revisions of "1.21.3.1-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AICARTRANSFORM-RXN AICARTRANSFORM-RXN] == * direction: ** reversible * common-name: ** aicar transf...")
(Created page with "Category:reaction == Reaction RXN-15122 == * direction: ** reversible * common-name: ** threonine deaminase == Reaction formula == * 1 THR[c] '''<=>''' 1 CPD-15056...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AICARTRANSFORM-RXN AICARTRANSFORM-RXN] ==
+
== Reaction RXN-15122 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** aicar transformylase
+
** threonine deaminase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.1.2.3 ec-2.1.2.3]
 
−
* synonymous:
 
−
** 5-aminoimidazole-4-carboxamide ribonucleotide transformylase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AICAR]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''<=>''' 1 [[PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[THR]][c] '''<=>''' 1 [[CPD-15056]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21660]]
+
* Gene: [[SJ08066]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10955]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6123 PWY-6123]
+
* [[PWY-5437]], L-threonine degradation I:
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6124 PWY-6124]
+
* [[PWY-5826]], hypoglycin biosynthesis:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''14''' reactions in the full pathway
 +
* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine):
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22195 22195]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04560 R04560]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P43852 P43852]
 
−
** [http://www.uniprot.org/uniprot/P12048 P12048]
 
−
** [http://www.uniprot.org/uniprot/P31335 P31335]
 
−
** [http://www.uniprot.org/uniprot/P26978 P26978]
 
−
** [http://www.uniprot.org/uniprot/P15639 P15639]
 
−
** [http://www.uniprot.org/uniprot/Q9PNY2 Q9PNY2]
 
−
** [http://www.uniprot.org/uniprot/Q9JUQ8 Q9JUQ8]
 
−
** [http://www.uniprot.org/uniprot/P31939 P31939]
 
−
** [http://www.uniprot.org/uniprot/Q59493 Q59493]
 
−
** [http://www.uniprot.org/uniprot/P38009 P38009]
 
−
** [http://www.uniprot.org/uniprot/P54113 P54113]
 
−
** [http://www.uniprot.org/uniprot/O64767 O64767]
 
−
** [http://www.uniprot.org/uniprot/O74928 O74928]
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=aicar transformylase}}
+
{{#set: common-name=threonine deaminase}}
−
{{#set: ec-number=ec-2.1.2.3}}
+
{{#set: nb gene associated=2}}
−
{{#set: synonymous=5-aminoimidazole-4-carboxamide ribonucleotide transformylase}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=2}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:42, 18 December 2020

Reaction RXN-15122

  • direction:
    • reversible
  • common-name:
    • threonine deaminase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5437, L-threonine degradation I:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-5826, hypoglycin biosynthesis:
    • 2 reactions found over 14 reactions in the full pathway
  • ILEUSYN-PWY, L-isoleucine biosynthesis I (from threonine):
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=1.21.3.1-RXN&oldid=50370"