Difference between revisions of "2-HYDROXYGLUTARATE-DEHYDROGENASE-RXN"

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(Created page with "Category:reaction == Reaction 3.2.1.39-RXN == * direction: ** left-to-right * common-name: ** glucan endo-1,3-beta-d-glucosidase * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction S-ADENMETSYN-RXN == * direction: ** left-to-right * common-name: ** methionine adenosyltransferase * ec-number: ** [http://enzyme.expasy.org/...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.39-RXN ==
+
== Reaction S-ADENMETSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glucan endo-1,3-beta-d-glucosidase
+
** methionine adenosyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.39 ec-3.2.1.39]
+
** [http://enzyme.expasy.org/EC/2.5.1.6 ec-2.5.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[Glucopyranose]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07891]]
−
* Gene: [[SJ18897]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00941]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06638]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05782]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14973]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11958]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05533]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05532]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16402]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05257]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[ETHYL-PWY]], ethylene biosynthesis I (plants):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5041]], S-adenosyl-L-methionine cycle II:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21081 21081]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7M1Y3 Q7M1Y3]
+
** [http://www.uniprot.org/uniprot/P19358 P19358]
−
** [http://www.uniprot.org/uniprot/P23546 P23546]
+
** [http://www.uniprot.org/uniprot/P18298 P18298]
−
** [http://www.uniprot.org/uniprot/Q7M1Y2 Q7M1Y2]
+
** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
−
** [http://www.uniprot.org/uniprot/P23547 P23547]
+
** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
−
** [http://www.uniprot.org/uniprot/P27666 P27666]
+
** [http://www.uniprot.org/uniprot/P54419 P54419]
−
** [http://www.uniprot.org/uniprot/Q7M1Y5 Q7M1Y5]
+
** [http://www.uniprot.org/uniprot/P56460 P56460]
−
** [http://www.uniprot.org/uniprot/Q7M1Y4 Q7M1Y4]
+
** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
−
** [http://www.uniprot.org/uniprot/P34742 P34742]
+
** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
−
** [http://www.uniprot.org/uniprot/Q02437 Q02437]
+
** [http://www.uniprot.org/uniprot/O50163 O50163]
−
** [http://www.uniprot.org/uniprot/Q45095 Q45095]
+
** [http://www.uniprot.org/uniprot/P43762 P43762]
−
** [http://www.uniprot.org/uniprot/P33157 P33157]
+
** [http://www.uniprot.org/uniprot/P23686 P23686]
−
** [http://www.uniprot.org/uniprot/Q41181 Q41181]
+
** [http://www.uniprot.org/uniprot/P17562 P17562]
−
** [http://www.uniprot.org/uniprot/P15737 P15737]
+
** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
−
** [http://www.uniprot.org/uniprot/P23432 P23432]
+
** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
−
** [http://www.uniprot.org/uniprot/P23433 P23433]
+
** [http://www.uniprot.org/uniprot/Q90862 Q90862]
−
** [http://www.uniprot.org/uniprot/P36401 P36401]
+
** [http://www.uniprot.org/uniprot/P13444 P13444]
−
** [http://www.uniprot.org/uniprot/Q40753 Q40753]
+
** [http://www.uniprot.org/uniprot/P31153 P31153]
−
** [http://www.uniprot.org/uniprot/Q7M1V4 Q7M1V4]
+
** [http://www.uniprot.org/uniprot/Q00266 Q00266]
−
** [http://www.uniprot.org/uniprot/Q02126 Q02126]
+
** [http://www.uniprot.org/uniprot/P43281 P43281]
−
** [http://www.uniprot.org/uniprot/Q06773 Q06773]
+
** [http://www.uniprot.org/uniprot/P40320 P40320]
−
** [http://www.uniprot.org/uniprot/P52401 P52401]
+
** [http://www.uniprot.org/uniprot/P43280 P43280]
−
** [http://www.uniprot.org/uniprot/Q02438 Q02438]
+
** [http://www.uniprot.org/uniprot/P43282 P43282]
−
** [http://www.uniprot.org/uniprot/Q42944 Q42944]
+
** [http://www.uniprot.org/uniprot/P48498 P48498]
−
** [http://www.uniprot.org/uniprot/P52400 P52400]
+
** [http://www.uniprot.org/uniprot/P10659 P10659]
−
** [http://www.uniprot.org/uniprot/P52402 P52402]
+
** [http://www.uniprot.org/uniprot/Q39465 Q39465]
−
** [http://www.uniprot.org/uniprot/Q9R650 Q9R650]
+
** [http://www.uniprot.org/uniprot/P48466 P48466]
−
** [http://www.uniprot.org/uniprot/P52398 P52398]
+
** [http://www.uniprot.org/uniprot/P49612 P49612]
−
** [http://www.uniprot.org/uniprot/P52399 P52399]
+
** [http://www.uniprot.org/uniprot/P49613 P49613]
−
** [http://www.uniprot.org/uniprot/O50007 O50007]
+
** [http://www.uniprot.org/uniprot/P78003 P78003]
−
** [http://www.uniprot.org/uniprot/Q43851 Q43851]
+
** [http://www.uniprot.org/uniprot/Q49070 Q49070]
−
** [http://www.uniprot.org/uniprot/Q03467 Q03467]
+
** [http://www.uniprot.org/uniprot/P0A817 P0A817]
−
** [http://www.uniprot.org/uniprot/Q03773 Q03773]
+
** [http://www.uniprot.org/uniprot/P50299 P50299]
−
** [http://www.uniprot.org/uniprot/O82063 O82063]
+
** [http://www.uniprot.org/uniprot/O22350 O22350]
−
** [http://www.uniprot.org/uniprot/O23783 O23783]
+
** [http://www.uniprot.org/uniprot/P24260 P24260]
−
** [http://www.uniprot.org/uniprot/Q9M2M3 Q9M2M3]
+
** [http://www.uniprot.org/uniprot/O60198 O60198]
−
** [http://www.uniprot.org/uniprot/Q9M4A9 Q9M4A9]
+
** [http://www.uniprot.org/uniprot/Q12642 Q12642]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glucan endo-1,3-beta-d-glucosidase}}
+
{{#set: common-name=methionine adenosyltransferase}}
−
{{#set: ec-number=ec-3.2.1.39}}
+
{{#set: ec-number=ec-2.5.1.6}}
−
{{#set: nb gene associated=10}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:14, 14 January 2021

Reaction S-ADENMETSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • methionine adenosyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ETHYL-PWY, ethylene biosynthesis I (plants):
    • 3 reactions found over 3 reactions in the full pathway
  • METHIONINE-DEG1-PWY, L-methionine degradation I (to L-homocysteine):
    • 2 reactions found over 3 reactions in the full pathway
  • SAM-PWY, S-adenosyl-L-methionine biosynthesis:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5912, 2'-deoxymugineic acid phytosiderophore biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5041, S-adenosyl-L-methionine cycle II:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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