Difference between revisions of "2-MEBUCOA-FAD-RXN"

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(Created page with "Category:reaction == Reaction RXN0-6525 == * direction: ** left-to-right * common-name: ** rnase bn exoribonuclease * ec-number: ** [http://enzyme.expasy.org/EC/3.1.13.1 e...")
(Created page with "Category:reaction == Reaction PYRUFLAVREDUCT-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.2.7.1 ec-1.2.7.1] == Reaction formula == * 1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN0-6525 ==
+
== Reaction PYRUFLAVREDUCT-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* common-name:
 
** rnase bn exoribonuclease
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/3.1.13.1 ec-3.1.13.1]
+
** [http://enzyme.expasy.org/EC/1.2.7.1 ec-1.2.7.1]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[MUTATED-TRNA]][c] '''+''' n [[WATER]][c] '''=>''' n [[Nucleoside-Monophosphates]][c]
+
* 1 [[CO-A]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[PYRUVATE]][c] '''<=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ19616]]
+
* Gene: [[SJ19470]]
** Category: [[annotation]]
+
** Category: [[orthology]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09312]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15200]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative):
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5493]], reductive monocarboxylic acid cycle:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6587]], pyruvate fermentation to ethanol III:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6588]], pyruvate fermentation to acetone:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[PWY-6583]], pyruvate fermentation to butanol I:
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5483]], pyruvate fermentation to acetate III:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[P42-PWY]], incomplete reductive TCA cycle:
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II:
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[P142-PWY]], pyruvate fermentation to acetate I:
 +
** '''2''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLUDEG-II-PWY]], L-glutamate degradation VII (to butanoate):
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5538]], pyruvate fermentation to acetate VI:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6876]], isopropanol biosynthesis (engineered):
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5600]], pyruvate fermentation to acetate VII:
 +
** '''2''' reactions found over '''1''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
{{#set: common-name=rnase bn exoribonuclease}}
+
* RHEA:
{{#set: ec-number=ec-3.1.13.1}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12768 12768]
{{#set: nb gene associated=1}}
+
* LIGAND-RXN:
{{#set: nb pathway associated=0}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01196 R01196]
{{#set: reconstruction category=annotation}}
+
* UNIPROT:
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q57957 Q57957]
 +
** [http://www.uniprot.org/uniprot/O28574 O28574]
 +
** [http://www.uniprot.org/uniprot/Q56316 Q56316]
 +
** [http://www.uniprot.org/uniprot/Q9R503 Q9R503]
 +
** [http://www.uniprot.org/uniprot/Q57714 Q57714]
 +
** [http://www.uniprot.org/uniprot/O05651 O05651]
 +
** [http://www.uniprot.org/uniprot/Q57715 Q57715]
 +
** [http://www.uniprot.org/uniprot/O27771 O27771]
 +
** [http://www.uniprot.org/uniprot/O28572 O28572]
 +
** [http://www.uniprot.org/uniprot/Q56317 Q56317]
 +
** [http://www.uniprot.org/uniprot/Q9UWL2 Q9UWL2]
 +
** [http://www.uniprot.org/uniprot/P56810 P56810]
 +
** [http://www.uniprot.org/uniprot/O28571 O28571]
 +
** [http://www.uniprot.org/uniprot/Q9UWL1 Q9UWL1]
 +
** [http://www.uniprot.org/uniprot/Q57717 Q57717]
 +
** [http://www.uniprot.org/uniprot/O25312 O25312]
 +
** [http://www.uniprot.org/uniprot/O25738 O25738]
 +
** [http://www.uniprot.org/uniprot/O25739 O25739]
 +
** [http://www.uniprot.org/uniprot/O58411 O58411]
 +
** [http://www.uniprot.org/uniprot/Q9UYZ4 Q9UYZ4]
 +
** [http://www.uniprot.org/uniprot/Q9UYZ3 Q9UYZ3]
 +
** [http://www.uniprot.org/uniprot/Q59455 Q59455]
 +
** [http://www.uniprot.org/uniprot/Q59456 Q59456]
 +
** [http://www.uniprot.org/uniprot/P80521 P80521]
 +
** [http://www.uniprot.org/uniprot/P80522 P80522]
 +
** [http://www.uniprot.org/uniprot/P80523 P80523]
 +
** [http://www.uniprot.org/uniprot/P80524 P80524]
 +
** [http://www.uniprot.org/uniprot/P95903 P95903]
 +
** [http://www.uniprot.org/uniprot/P95904 P95904]
 +
** [http://www.uniprot.org/uniprot/Q51799 Q51799]
 +
** [http://www.uniprot.org/uniprot/Q51800 Q51800]
 +
** [http://www.uniprot.org/uniprot/Q51802 Q51802]
 +
** [http://www.uniprot.org/uniprot/Q51803 Q51803]
 +
** [http://www.uniprot.org/uniprot/Q51804 Q51804]
 +
** [http://www.uniprot.org/uniprot/Q51805 Q51805]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: ec-number=ec-1.2.7.1}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=18}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:03, 5 January 2021

Reaction PYRUFLAVREDUCT-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative):
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-5493, reductive monocarboxylic acid cycle:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered):
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-6587, pyruvate fermentation to ethanol III:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6588, pyruvate fermentation to acetone:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway
  • PWY-6583, pyruvate fermentation to butanol I:
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5483, pyruvate fermentation to acetate III:
    • 1 reactions found over 2 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate:
    • 5 reactions found over 7 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 6 reactions found over 12 reactions in the full pathway
  • P142-PWY, pyruvate fermentation to acetate I:
    • 2 reactions found over 1 reactions in the full pathway
  • GLUDEG-II-PWY, L-glutamate degradation VII (to butanoate):
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-5538, pyruvate fermentation to acetate VI:
    • 2 reactions found over 2 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-6876, isopropanol biosynthesis (engineered):
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5600, pyruvate fermentation to acetate VII:
    • 2 reactions found over 1 reactions in the full pathway

Reconstruction information

External links