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| − | [[Category:reaction]] | + | [[Category:pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRIMETHYLLYSINE-DIOXYGENASE-RXN TRIMETHYLLYSINE-DIOXYGENASE-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY] == |
| − | * direction: | + | * taxonomic-range: |
| − | ** left-to-right | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33630 tax-33630] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] |
| | * common-name: | | * common-name: |
| − | ** trimethyllysine dioxygenase | + | ** heme b biosynthesis ii (anaerobic) |
| − | * ec-number:
| + | == Reaction(s) found == |
| − | ** [http://enzyme.expasy.org/EC/1.14.11.8 ec-1.14.11.8]
| + | * [[HEMN-RXN]] |
| − | == Reaction formula == | + | * [[PROTOHEMEFERROCHELAT-RXN]] |
| − | * 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[N6N6N6-TRIMETHYL-L-LYSINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[3-HYDROXY-N6N6N6-TRIMETHYL-L-LYSINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
| + | * [[UROGENDECARBOX-RXN]] |
| − | == Gene(s) associated with this reaction ==
| + | == Reaction(s) not found == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6259 RXN0-6259] |
| − | * Gene: [[SJ15054]]
| + | {{#set: taxonomic-range=tax-33630|tax-4751|tax-2}} |
| − | ** Category: [[annotation]]
| + | {{#set: common-name=heme b biosynthesis ii (anaerobic)}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | {{#set: nb reaction found=3}} |
| − | * Gene: [[SJ07386]]
| + | {{#set: completion rate=0.75}} |
| − | ** Category: [[annotation]]
| + | {{#set: nb total reaction=4}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | |
| − | * Gene: [[SJ12451]]
| |
| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ04638]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ09343]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ04640]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ04639]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ18761]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ01929]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | </div>
| |
| − | == Pathway(s) == | |
| − | * [[PWY-6100]], L-carnitine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6100 PWY-6100] | |
| − | ** '''3''' reactions found over '''4''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | == External links ==
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14182 14182]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R03451 R03451]
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=trimethyllysine dioxygenase}} | |
| − | {{#set: ec-number=ec-1.14.11.8}}
| |
| − | {{#set: nb gene associated=9}} | |
| − | {{#set: nb pathway associated=1}}
| |
| − | {{#set: reconstruction category=annotation}}
| |
| − | {{#set: reconstruction tool=pathwaytools}}
| |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | |
