Difference between revisions of "2.4.1.67-RXN"

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(Created page with "Category:reaction == Reaction RXN-16134 == * direction: ** left-to-right * common-name: ** (6z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa oxidase ** acyl-coa oxidase * ec-...")
(Created page with "Category:reaction == Reaction 2.4.1.225-RXN == * direction: ** left-to-right * common-name: ** n-acetylglucosaminyl-proteoglycan 4-β-glucuronosyltransferase * ec-numb...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16134 ==
+
== Reaction 2.4.1.225-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** (6z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa oxidase
+
** n-acetylglucosaminyl-proteoglycan 4-β-glucuronosyltransferase
−
** acyl-coa oxidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6]
+
** [http://enzyme.expasy.org/EC/2.4.1.225 ec-2.4.1.225]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-17385]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-17386]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
* 1 [[GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP-GLUCURONATE]][c] '''=>''' 1 [[GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19669]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[orthology]]
+
* Gene: [[SJ11522]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07452]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ03090]]
+
* Gene: [[SJ01052]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08300]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08295]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08296]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14184]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13468]]
+
* Gene: [[SJ14192]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ07780]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07451]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
</div>
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals):
+
* [[PWY-6558]], heparan sulfate biosynthesis (late stages):
−
** '''8''' reactions found over '''14''' reactions in the full pathway
+
** '''7''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20909 20909]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07335 R07335]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acyl-coa oxidase|(6z,9z,12z,15z,18z,21z)-tetracosahexaenoyl-coa oxidase}}
+
{{#set: common-name=n-acetylglucosaminyl-proteoglycan 4-&beta;-glucuronosyltransferase}}
−
{{#set: ec-number=ec-1.3.3.6}}
+
{{#set: ec-number=ec-2.4.1.225}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=8}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:04, 5 January 2021

Reaction 2.4.1.225-RXN

  • direction:
    • left-to-right
  • common-name:
    • n-acetylglucosaminyl-proteoglycan 4-β-glucuronosyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6558, heparan sulfate biosynthesis (late stages):
    • 7 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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