Difference between revisions of "2.5.1.32-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-3...")
(Created page with "Category:reaction == Reaction 2.5.1.32-RXN == * direction: ** left-to-right * common-name: ** prephytoene diphosphate synthase * synonymous: ** geranylgeranyl-diphosphate...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787] ==
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== Reaction 2.5.1.32-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-3257 tax-3257]
 
 
* common-name:
 
* common-name:
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** flavonoid biosynthesis (in equisetum)
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** prephytoene diphosphate synthase
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== Reaction(s) found ==
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* synonymous:
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* [[APIGNAR-RXN]]
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** geranylgeranyl-diphosphate geranylgeranyltransferase
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* [[NARINGENIN-3-DIOXYGENASE-RXN]]
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** psase
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* [[NARINGENIN-CHALCONE-SYNTHASE-RXN]]
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== Reaction formula ==
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* [[RXN-527]]
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* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
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* [[RXN-7775]]
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== Gene(s) associated with this reaction  ==
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* [[RXN1F-93]]
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* Gene: [[SJ02885]]
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== Reaction(s) not found ==
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7687 RXN-7687]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7652 RXN-7652]
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** Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7921 RXN-7921]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7686 RXN-7686]
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== Pathway(s)  ==
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{{#set: taxonomic-range=tax-33090|tax-3257}}
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* [[PWY-7943]], lycopadiene biosynthesis:
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{{#set: common-name=flavonoid biosynthesis (in equisetum)}}
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** '''1''' reactions found over '''7''' reactions in the full pathway
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{{#set: nb reaction found=6}}
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* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
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{{#set: completion rate=0.6}}
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** '''8''' reactions found over '''8''' reactions in the full pathway
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{{#set: nb total reaction=10}}
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* [[PWY-6287]], neurosporene biosynthesis:
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR102655
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P53609 P53609]
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** [http://www.uniprot.org/uniprot/P37295 P37295]
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** [http://www.uniprot.org/uniprot/P22872 P22872]
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** [http://www.uniprot.org/uniprot/P53610 P53610]
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** [http://www.uniprot.org/uniprot/P53612 P53612]
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** [http://www.uniprot.org/uniprot/P17056 P17056]
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** [http://www.uniprot.org/uniprot/P49293 P49293]
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{{#set: direction=left-to-right}}
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{{#set: common-name=prephytoene diphosphate synthase}}
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{{#set: synonymous=geranylgeranyl-diphosphate geranylgeranyltransferase|psase}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction 2.5.1.32-RXN

  • direction:
    • left-to-right
  • common-name:
    • prephytoene diphosphate synthase
  • synonymous:
    • geranylgeranyl-diphosphate geranylgeranyltransferase
    • psase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7943, lycopadiene biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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