Difference between revisions of "2KETO-3METHYLVALERATE-RXN"

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(Created page with "Category:reaction == Reaction 2.5.1.32-RXN == * direction: ** left-to-right * common-name: ** prephytoene diphosphate synthase * synonymous: ** geranylgeranyl-diphosphate...")
(Created page with "Category:reaction == Reaction 2KETO-3METHYLVALERATE-RXN == * direction: ** reversible * common-name: ** (s)-3-methyl-2-oxopentanoate dehydrogenase (acylating) * ec-number:...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.5.1.32-RXN ==
+
== Reaction 2KETO-3METHYLVALERATE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** prephytoene diphosphate synthase
+
** (s)-3-methyl-2-oxopentanoate dehydrogenase (acylating)
−
* synonymous:
+
* ec-number:
−
** geranylgeranyl-diphosphate geranylgeranyltransferase
+
** [http://enzyme.expasy.org/EC/1.2.1 ec-1.2.1]
−
** psase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[2-METHYL-BUTYRYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02885]]
+
* Gene: [[SJ11017]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18449]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11016]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7943]], lycopadiene biosynthesis:
+
* [[PWY-5108]], L-isoleucine biosynthesis V:
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
+
* [[ILEUDEG-PWY]], L-isoleucine degradation I:
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6287]], neurosporene biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR102655
+
* METANETX-RXN : MNXR102174
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30910 30910]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03171 R03171]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P53609 P53609]
+
{{#set: common-name=(s)-3-methyl-2-oxopentanoate dehydrogenase (acylating)}}
−
** [http://www.uniprot.org/uniprot/P37295 P37295]
+
{{#set: ec-number=ec-1.2.1}}
−
** [http://www.uniprot.org/uniprot/P22872 P22872]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/P53610 P53610]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/P53612 P53612]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/P17056 P17056]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P49293 P49293]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=prephytoene diphosphate synthase}}
 
−
{{#set: synonymous=psase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:25, 18 March 2021

Reaction 2KETO-3METHYLVALERATE-RXN

  • direction:
    • reversible
  • common-name:
    • (s)-3-methyl-2-oxopentanoate dehydrogenase (acylating)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5108, L-isoleucine biosynthesis V:
    • 2 reactions found over 3 reactions in the full pathway
  • ILEUDEG-PWY, L-isoleucine degradation I:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR102174
  • RHEA:
  • LIGAND-RXN:





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