Difference between revisions of "2TRANSKETO-RXN"

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(Created page with "Category:reaction == Reaction ARGSUCCINSYN-RXN == * direction: ** left-to-right * common-name: ** argininosuccinate synthase * ec-number: ** [http://enzyme.expasy.org/EC/6...")
(Created page with "Category:reaction == Reaction 2TRANSKETO-RXN == * direction: ** reversible * common-name: ** transketolase * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ARGSUCCINSYN-RXN ==
+
== Reaction 2TRANSKETO-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** argininosuccinate synthase
+
** transketolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.5 ec-6.3.4.5]
+
** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[L-CITRULLINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[L-ARGININO-SUCCINATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10377]]
+
* Gene: [[SJ12529]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12026]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria):
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-4984]], urea cycle:
+
* [[P21-PWY]], pentose phosphate pathway (partial):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch) I:
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine):
+
* [[PWY-6901]], superpathway of glucose and xylose degradation:
−
** '''5''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''8''' reactions in the full pathway
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle):
+
* [[PWY-5723]], Rubisco shunt:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-4983]], nitric oxide biosynthesis II (mammals):
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104869
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10932 10932]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27629 27629]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01954 R01954]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P22768 P22768]
+
** [http://www.uniprot.org/uniprot/P22976 P22976]
−
** [http://www.uniprot.org/uniprot/P0A6E4 P0A6E4]
+
** [http://www.uniprot.org/uniprot/P29401 P29401]
−
** [http://www.uniprot.org/uniprot/P00966 P00966]
+
** [http://www.uniprot.org/uniprot/P33570 P33570]
−
** [http://www.uniprot.org/uniprot/P16460 P16460]
+
** [http://www.uniprot.org/uniprot/P21725 P21725]
−
** [http://www.uniprot.org/uniprot/P13256 P13256]
+
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
−
** [http://www.uniprot.org/uniprot/P13257 P13257]
+
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
−
** [http://www.uniprot.org/uniprot/P09034 P09034]
+
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
−
** [http://www.uniprot.org/uniprot/P24532 P24532]
+
** [http://www.uniprot.org/uniprot/P21726 P21726]
−
** [http://www.uniprot.org/uniprot/Q9PHK7 Q9PHK7]
+
** [http://www.uniprot.org/uniprot/P47312 P47312]
−
** [http://www.uniprot.org/uniprot/P57799 P57799]
+
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
−
** [http://www.uniprot.org/uniprot/Q60174 Q60174]
+
** [http://www.uniprot.org/uniprot/P43757 P43757]
−
** [http://www.uniprot.org/uniprot/P44315 P44315]
+
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
−
** [http://www.uniprot.org/uniprot/Q9JWM1 Q9JWM1]
+
** [http://www.uniprot.org/uniprot/P45694 P45694]
−
** [http://www.uniprot.org/uniprot/P50986 P50986]
+
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
−
** [http://www.uniprot.org/uniprot/Q06734 Q06734]
+
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
−
** [http://www.uniprot.org/uniprot/P0C1A1 P0C1A1]
+
** [http://www.uniprot.org/uniprot/P34736 P34736]
−
** [http://www.uniprot.org/uniprot/Q59491 Q59491]
+
** [http://www.uniprot.org/uniprot/P33315 P33315]
 +
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
 +
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
 +
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
 +
** [http://www.uniprot.org/uniprot/P46708 P46708]
 +
** [http://www.uniprot.org/uniprot/P75611 P75611]
 +
** [http://www.uniprot.org/uniprot/P73282 P73282]
 +
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
 +
** [http://www.uniprot.org/uniprot/O20250 O20250]
 +
** [http://www.uniprot.org/uniprot/O78327 O78327]
 +
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
 +
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
 +
** [http://www.uniprot.org/uniprot/P23254 P23254]
 +
** [http://www.uniprot.org/uniprot/P27302 P27302]
 +
** [http://www.uniprot.org/uniprot/P29277 P29277]
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=argininosuccinate synthase}}
+
{{#set: common-name=transketolase}}
−
{{#set: ec-number=ec-6.3.4.5}}
+
{{#set: ec-number=ec-2.2.1.1}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction 2TRANSKETO-RXN

  • direction:
    • reversible
  • common-name:
    • transketolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial):
    • 3 reactions found over 3 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch) I:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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