Difference between revisions of "2TRANSKETO-RXN"

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(Created page with "Category:reaction == Reaction L-ASPARTATE-OXID-RXN == * direction: ** left-to-right * common-name: ** l-aspartate oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.4....")
(Created page with "Category:reaction == Reaction GLYCOLATEDEHYDRO-RXN == * direction: ** left-to-right * common-name: ** glycolate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction L-ASPARTATE-OXID-RXN ==
+
== Reaction GLYCOLATEDEHYDRO-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** l-aspartate oxidase
+
** glycolate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.3.16 ec-1.4.3.16]
+
** [http://enzyme.expasy.org/EC/1.1.99.14 ec-1.1.99.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-ASPARTATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[IMINOASPARTATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[Acceptor]][c] '''+''' 1 [[GLYCOLLATE]][c] '''=>''' 1 [[Donor-H2]][c] '''+''' 1 [[GLYOX]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19480]]
+
* Gene: [[SJ21294]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate):
+
* [[PWY-6649]], glycolate and glyoxylate degradation III:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5316]], nicotine biosynthesis:
+
* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II:
−
** '''3''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7342]], superpathway of nicotine biosynthesis:
+
* [[GLYCOLATEMET-PWY]], glycolate and glyoxylate degradation I:
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25877 25877]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21264 21264]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00481 R00481]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00476 R00476]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-aspartate oxidase}}
+
{{#set: common-name=glycolate dehydrogenase}}
−
{{#set: ec-number=ec-1.4.3.16}}
+
{{#set: ec-number=ec-1.1.99.14}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:21, 14 January 2021

Reaction GLYCOLATEDEHYDRO-RXN

  • direction:
    • left-to-right
  • common-name:
    • glycolate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6649, glycolate and glyoxylate degradation III:
    • 1 reactions found over 3 reactions in the full pathway
  • GLYOXDEG-PWY, glycolate and glyoxylate degradation II:
    • 2 reactions found over 2 reactions in the full pathway
  • GLYCOLATEMET-PWY, glycolate and glyoxylate degradation I:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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