Difference between revisions of "3-DEHYDROQUINATE-DEHYDRATASE-RXN"

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(Created page with "Category:reaction == Reaction METHIONYL-TRNA-FORMYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** 10-formyltetrahydrofolate:l-methionyl-trnafmet n-form...")
(Created page with "Category:reaction == Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN == * direction: ** reversible * common-name: ** 3-dehydroquinate dehydratase * ec-number: ** [http://enzyme....")
 
(4 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHIONYL-TRNA-FORMYLTRANSFERASE-RXN ==
+
== Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 10-formyltetrahydrofolate:l-methionyl-trnafmet n-formyltransferase
+
** 3-dehydroquinate dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.9 ec-2.1.2.9]
+
** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4.2.1.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[L-methionyl-tRNAfmet]][c] '''=>''' 1 [[N-formyl-L-methionyl-tRNAfmet]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18164]]
+
* Gene: [[SJ01054]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08386]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10493]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13450]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6707]], gallate biosynthesis:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
 +
** '''6''' reactions found over '''5''' reactions in the full pathway
 +
* [[QUINATEDEG-PWY]], quinate degradation I:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6416]], quinate degradation II:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR97449
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24381 24381]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21099 21099]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03940 R03940]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P94463 P94463]
+
** [http://www.uniprot.org/uniprot/P05195 P05195]
−
** [http://www.uniprot.org/uniprot/Q9PJ28 Q9PJ28]
+
** [http://www.uniprot.org/uniprot/P46380 P46380]
−
** [http://www.uniprot.org/uniprot/P50932 P50932]
+
** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
−
** [http://www.uniprot.org/uniprot/P47605 P47605]
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
−
** [http://www.uniprot.org/uniprot/P44787 P44787]
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
−
** [http://www.uniprot.org/uniprot/P56461 P56461]
+
** [http://www.uniprot.org/uniprot/P43878 P43878]
−
** [http://www.uniprot.org/uniprot/Q9CEE9 Q9CEE9]
+
** [http://www.uniprot.org/uniprot/P05194 P05194]
−
** [http://www.uniprot.org/uniprot/O51091 O51091]
+
** [http://www.uniprot.org/uniprot/Q58849 Q58849]
−
** [http://www.uniprot.org/uniprot/Q9JWY9 Q9JWY9]
+
** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
−
** [http://www.uniprot.org/uniprot/P23882 P23882]
+
** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
−
** [http://www.uniprot.org/uniprot/P32785 P32785]
+
** [http://www.uniprot.org/uniprot/P05147 P05147]
−
** [http://www.uniprot.org/uniprot/P75235 P75235]
+
** [http://www.uniprot.org/uniprot/P24670 P24670]
−
** [http://www.uniprot.org/uniprot/Q55163 Q55163]
+
** [http://www.uniprot.org/uniprot/P35146 P35146]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
−
{{#set: common-name=10-formyltetrahydrofolate:l-methionyl-trnafmet n-formyltransferase}}
+
** [http://www.uniprot.org/uniprot/Q48255 Q48255]
−
{{#set: ec-number=ec-2.1.2.9}}
+
** [http://www.uniprot.org/uniprot/P73367 P73367]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/O65917 O65917]
−
{{#set: nb pathway associated=0}}
+
</div>
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: direction=reversible}}
 +
{{#set: common-name=3-dehydroquinate dehydratase}}
 +
{{#set: ec-number=ec-4.2.1.10}}
 +
{{#set: nb gene associated=4}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN

  • direction:
    • reversible
  • common-name:
    • 3-dehydroquinate dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6707, gallate biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway
  • QUINATEDEG-PWY, quinate degradation I:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6416, quinate degradation II:
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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