Difference between revisions of "3-OXOACYL-ACP-SYNTH-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1-3 PWY1-3] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]...")
 
(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-RXN == * direction: ** left-to-right * common-name: ** fatty acid synthase * ec-number: ** [http://enzyme.expasy.org/EC/2...")
 
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[[Category:pathway]]
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[[Category:reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1-3 PWY1-3] ==
+
== Reaction 3-OXOACYL-ACP-SYNTH-RXN ==
* taxonomic-range:
+
* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]
+
** left-to-right
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
** polyhydroxybutanoate biosynthesis
+
** fatty acid synthase
== Reaction(s) found ==
+
* ec-number:
* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
* [[RXN-5901]]
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** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
== Reaction(s) not found ==
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** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN1-42 RXN1-42]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
{{#set: taxonomic-range=tax-2|tax-2157}}
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== Reaction formula ==
{{#set: common-name=polyhydroxybutanoate biosynthesis}}
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* 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
{{#set: nb reaction found=2}}
+
== Gene(s) associated with this reaction  ==
{{#set: completion rate=0.67}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
{{#set: nb total reaction=3}}
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* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04443]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06944]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00320]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04769]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15983]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18059]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00613]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13014]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10624]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03883]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00005]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15984]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 +
== Pathway(s) ==
 +
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115237
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P23902 P23902]
 +
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
 +
** [http://www.uniprot.org/uniprot/P49327 P49327]
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** [http://www.uniprot.org/uniprot/P43710 P43710]
 +
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
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** [http://www.uniprot.org/uniprot/O67612 O67612]
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** [http://www.uniprot.org/uniprot/P20582 P20582]
 +
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
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** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
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** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
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** [http://www.uniprot.org/uniprot/P43711 P43711]
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** [http://www.uniprot.org/uniprot/O25284 O25284]
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** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
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** [http://www.uniprot.org/uniprot/O34340 O34340]
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** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
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** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
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** [http://www.uniprot.org/uniprot/Q07510 Q07510]
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** [http://www.uniprot.org/uniprot/Q06097 Q06097]
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** [http://www.uniprot.org/uniprot/P41175 P41175]
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** [http://www.uniprot.org/uniprot/P31176 P31176]
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** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 +
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
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** [http://www.uniprot.org/uniprot/P73283 P73283]
 +
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 +
** [http://www.uniprot.org/uniprot/O64485 O64485]
 +
** [http://www.uniprot.org/uniprot/O65677 O65677]
 +
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
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** [http://www.uniprot.org/uniprot/O23738 O23738]
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** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 +
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 +
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 +
** [http://www.uniprot.org/uniprot/O54440 O54440]
 +
** [http://www.uniprot.org/uniprot/P55338 P55338]
 +
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 +
** [http://www.uniprot.org/uniprot/P12276 P12276]
 +
** [http://www.uniprot.org/uniprot/P12785 P12785]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=fatty acid synthase}}
 +
{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.41|ec-2.3.1.86|ec-2.3.1.179}}
 +
{{#set: nb gene associated=17}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction 3-OXOACYL-ACP-SYNTH-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • FASYN-ELONG-PWY, fatty acid elongation -- saturated:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links