Difference between revisions of "3.1.4.11-RXN"

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(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * direction: ** left-to-right * common-name: ** tryptophan synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4...")
(Created page with "Category:reaction == Reaction 3.1.4.11-RXN == * direction: ** left-to-right * common-name: ** phosphatidylinositol 4,5-bisphosphate lipase c ** phosphatidylinositol phosph...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction TRYPSYN-RXN ==
+
== Reaction 3.1.4.11-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** tryptophan synthase
+
** phosphatidylinositol 4,5-bisphosphate lipase c
 +
** phosphatidylinositol phospholipase c
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20]
+
** [http://enzyme.expasy.org/EC/3.1.4.11 ec-3.1.4.11]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[PHOSPHATIDYL-MYO-INOSITOL-45-BISPHOSPHA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DIACYLGLYCEROL]][c] '''+''' 1 [[INOSITOL-1-4-5-TRISPHOSPHATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ09991]]
+
* Gene: [[SJ20221]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16244]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ16706]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ20325]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ15468]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ10955]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16245]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6351]], D-myo-inositol (1,4,5)-trisphosphate biosynthesis:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7039]], phosphatidate metabolism, as a signaling molecule:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[LIPASYN-PWY]], phospholipases:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6367]], D-myo-inositol-5-phosphate metabolism:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR108168
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33180 33180]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03435 R03435]
 
* UNIPROT:
 
* UNIPROT:
** [http://www.uniprot.org/uniprot/P11081 P11081]
+
** [http://www.uniprot.org/uniprot/P10687 P10687]
** [http://www.uniprot.org/uniprot/P14671 P14671]
+
** [http://www.uniprot.org/uniprot/P10894 P10894]
** [http://www.uniprot.org/uniprot/P13228 P13228]
+
** [http://www.uniprot.org/uniprot/P10686 P10686]
** [http://www.uniprot.org/uniprot/P18284 P18284]
+
** [http://www.uniprot.org/uniprot/P24135 P24135]
** [http://www.uniprot.org/uniprot/P43759 P43759]
+
** [http://www.uniprot.org/uniprot/P19174 P19174]
** [http://www.uniprot.org/uniprot/O84172 O84172]
+
** [http://www.uniprot.org/uniprot/Q00722 Q00722]
** [http://www.uniprot.org/uniprot/P11080 P11080]
+
** [http://www.uniprot.org/uniprot/Q02158 Q02158]
** [http://www.uniprot.org/uniprot/P16608 P16608]
+
** [http://www.uniprot.org/uniprot/P32383 P32383]
** [http://www.uniprot.org/uniprot/P18285 P18285]
+
** [http://www.uniprot.org/uniprot/Q9TS13 Q9TS13]
** [http://www.uniprot.org/uniprot/P16706 P16706]
+
** [http://www.uniprot.org/uniprot/Q24284 Q24284]
** [http://www.uniprot.org/uniprot/P12290 P12290]
+
** [http://www.uniprot.org/uniprot/P51178 P51178]
** [http://www.uniprot.org/uniprot/P42391 P42391]
+
** [http://www.uniprot.org/uniprot/P10688 P10688]
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
+
** [http://www.uniprot.org/uniprot/P10895 P10895]
** [http://www.uniprot.org/uniprot/P12291 P12291]
+
** [http://www.uniprot.org/uniprot/Q60450 Q60450]
** [http://www.uniprot.org/uniprot/P42389 P42389]
+
** [http://www.uniprot.org/uniprot/P08487 P08487]
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
+
** [http://www.uniprot.org/uniprot/Q9STZ3 Q9STZ3]
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
+
** [http://www.uniprot.org/uniprot/P40977 P40977]
** [http://www.uniprot.org/uniprot/P07600 P07600]
+
** [http://www.uniprot.org/uniprot/Q21754 Q21754]
** [http://www.uniprot.org/uniprot/P07601 P07601]
 
** [http://www.uniprot.org/uniprot/P06561 P06561]
 
** [http://www.uniprot.org/uniprot/P56142 P56142]
 
** [http://www.uniprot.org/uniprot/P06562 P06562]
 
** [http://www.uniprot.org/uniprot/O27696 O27696]
 
** [http://www.uniprot.org/uniprot/O28672 O28672]
 
** [http://www.uniprot.org/uniprot/O66923 O66923]
 
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
 
** [http://www.uniprot.org/uniprot/P43760 P43760]
 
** [http://www.uniprot.org/uniprot/P34817 P34817]
 
** [http://www.uniprot.org/uniprot/P34816 P34816]
 
** [http://www.uniprot.org/uniprot/P17167 P17167]
 
** [http://www.uniprot.org/uniprot/P17166 P17166]
 
** [http://www.uniprot.org/uniprot/P19868 P19868]
 
** [http://www.uniprot.org/uniprot/P19867 P19867]
 
** [http://www.uniprot.org/uniprot/P16578 P16578]
 
** [http://www.uniprot.org/uniprot/P43283 P43283]
 
** [http://www.uniprot.org/uniprot/P43284 P43284]
 
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
 
** [http://www.uniprot.org/uniprot/P31204 P31204]
 
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
 
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
 
** [http://www.uniprot.org/uniprot/P34793 P34793]
 
** [http://www.uniprot.org/uniprot/P42390 P42390]
 
** [http://www.uniprot.org/uniprot/P50909 P50909]
 
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 
** [http://www.uniprot.org/uniprot/P51382 P51382]
 
** [http://www.uniprot.org/uniprot/P77960 P77960]
 
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 
** [http://www.uniprot.org/uniprot/O22765 O22765]
 
** [http://www.uniprot.org/uniprot/O04225 O04225]
 
** [http://www.uniprot.org/uniprot/P25269 P25269]
 
** [http://www.uniprot.org/uniprot/O64991 O64991]
 
** [http://www.uniprot.org/uniprot/O05625 O05625]
 
** [http://www.uniprot.org/uniprot/O13831 O13831]
 
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 
** [http://www.uniprot.org/uniprot/P00931 P00931]
 
** [http://www.uniprot.org/uniprot/P00929 P00929]
 
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=tryptophan synthase}}
+
{{#set: common-name=phosphatidylinositol phospholipase c|phosphatidylinositol 4,5-bisphosphate lipase c}}
{{#set: ec-number=ec-4.2.1.20}}
+
{{#set: ec-number=ec-3.1.4.11}}
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=3}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction 3.1.4.11-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphatidylinositol 4,5-bisphosphate lipase c
    • phosphatidylinositol phospholipase c
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6351, D-myo-inositol (1,4,5)-trisphosphate biosynthesis:
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7039, phosphatidate metabolism, as a signaling molecule:
    • 4 reactions found over 5 reactions in the full pathway
  • LIPASYN-PWY, phospholipases:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6367, D-myo-inositol-5-phosphate metabolism:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links