Difference between revisions of "3.1.4.11-RXN"

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(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * direction: ** left-to-right * common-name: ** tryptophan synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4...")
(Created page with "Category:reaction == Reaction THIOREDOXIN-REDUCT-NADPH-RXN == * direction: ** left-to-right * common-name: ** thioredoxin-disulfide reductase ** thioredoxin reductase * ec...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRYPSYN-RXN ==
+
== Reaction THIOREDOXIN-REDUCT-NADPH-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** tryptophan synthase
+
** thioredoxin-disulfide reductase
 +
** thioredoxin reductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20]
+
** [http://enzyme.expasy.org/EC/1.8.1.9 ec-1.8.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Red-Thioredoxin]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09991]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ16329]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06874]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01778]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ09093]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12278]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21339]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16706]]
+
* Gene: [[SJ21344]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00293]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20325]]
+
* Gene: [[SJ08960]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ15468]]
+
* Gene: [[SJ00760]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ10955]]
+
* Gene: [[SJ04991]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00931]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16658]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[THIOREDOX-PWY]], thioredoxin pathway:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20345 20345]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02016 R02016]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P11081 P11081]
+
** [http://www.uniprot.org/uniprot/Q05741 Q05741]
−
** [http://www.uniprot.org/uniprot/P14671 P14671]
+
** [http://www.uniprot.org/uniprot/P56431 P56431]
−
** [http://www.uniprot.org/uniprot/P13228 P13228]
+
** [http://www.uniprot.org/uniprot/O28718 O28718]
−
** [http://www.uniprot.org/uniprot/P18284 P18284]
+
** [http://www.uniprot.org/uniprot/P80880 P80880]
−
** [http://www.uniprot.org/uniprot/P43759 P43759]
+
** [http://www.uniprot.org/uniprot/P43496 P43496]
−
** [http://www.uniprot.org/uniprot/O84172 O84172]
+
** [http://www.uniprot.org/uniprot/P94284 P94284]
−
** [http://www.uniprot.org/uniprot/P11080 P11080]
+
** [http://www.uniprot.org/uniprot/O66790 O66790]
−
** [http://www.uniprot.org/uniprot/P16608 P16608]
+
** [http://www.uniprot.org/uniprot/Q9PIY1 Q9PIY1]
−
** [http://www.uniprot.org/uniprot/P18285 P18285]
+
** [http://www.uniprot.org/uniprot/P47348 P47348]
−
** [http://www.uniprot.org/uniprot/P16706 P16706]
+
** [http://www.uniprot.org/uniprot/Q9CH02 Q9CH02]
−
** [http://www.uniprot.org/uniprot/P12290 P12290]
+
** [http://www.uniprot.org/uniprot/Q7M0Y2 Q7M0Y2]
−
** [http://www.uniprot.org/uniprot/P42391 P42391]
+
** [http://www.uniprot.org/uniprot/O26804 O26804]
−
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
+
** [http://www.uniprot.org/uniprot/Q9JU23 Q9JU23]
−
** [http://www.uniprot.org/uniprot/P12291 P12291]
+
** [http://www.uniprot.org/uniprot/P43788 P43788]
−
** [http://www.uniprot.org/uniprot/P42389 P42389]
+
** [http://www.uniprot.org/uniprot/Q58931 Q58931]
−
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
+
** [http://www.uniprot.org/uniprot/Q9CF34 Q9CF34]
−
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
+
** [http://www.uniprot.org/uniprot/P0A9P4 P0A9P4]
−
** [http://www.uniprot.org/uniprot/P07600 P07600]
+
** [http://www.uniprot.org/uniprot/P23160 P23160]
−
** [http://www.uniprot.org/uniprot/P07601 P07601]
+
** [http://www.uniprot.org/uniprot/P39916 P39916]
−
** [http://www.uniprot.org/uniprot/P06561 P06561]
+
** [http://www.uniprot.org/uniprot/Q39242 Q39242]
−
** [http://www.uniprot.org/uniprot/P56142 P56142]
+
** [http://www.uniprot.org/uniprot/Q39243 Q39243]
−
** [http://www.uniprot.org/uniprot/P06562 P06562]
+
** [http://www.uniprot.org/uniprot/P38816 P38816]
−
** [http://www.uniprot.org/uniprot/O27696 O27696]
+
** [http://www.uniprot.org/uniprot/Q25861 Q25861]
−
** [http://www.uniprot.org/uniprot/O28672 O28672]
+
** [http://www.uniprot.org/uniprot/P29509 P29509]
−
** [http://www.uniprot.org/uniprot/O66923 O66923]
+
** [http://www.uniprot.org/uniprot/P52213 P52213]
−
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
+
** [http://www.uniprot.org/uniprot/Q16881 Q16881]
−
** [http://www.uniprot.org/uniprot/P43760 P43760]
+
** [http://www.uniprot.org/uniprot/P75531 P75531]
−
** [http://www.uniprot.org/uniprot/P34817 P34817]
+
** [http://www.uniprot.org/uniprot/P74746 P74746]
−
** [http://www.uniprot.org/uniprot/P34816 P34816]
+
** [http://www.uniprot.org/uniprot/P46843 P46843]
−
** [http://www.uniprot.org/uniprot/P17167 P17167]
+
** [http://www.uniprot.org/uniprot/O54535 O54535]
−
** [http://www.uniprot.org/uniprot/P17166 P17166]
+
** [http://www.uniprot.org/uniprot/Q39951 Q39951]
−
** [http://www.uniprot.org/uniprot/P19868 P19868]
+
** [http://www.uniprot.org/uniprot/Q92375 Q92375]
−
** [http://www.uniprot.org/uniprot/P19867 P19867]
+
** [http://www.uniprot.org/uniprot/P52215 P52215]
−
** [http://www.uniprot.org/uniprot/P16578 P16578]
+
** [http://www.uniprot.org/uniprot/P51978 P51978]
−
** [http://www.uniprot.org/uniprot/P43283 P43283]
 
−
** [http://www.uniprot.org/uniprot/P43284 P43284]
 
−
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
 
−
** [http://www.uniprot.org/uniprot/P31204 P31204]
 
−
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
 
−
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
 
−
** [http://www.uniprot.org/uniprot/P34793 P34793]
 
−
** [http://www.uniprot.org/uniprot/P42390 P42390]
 
−
** [http://www.uniprot.org/uniprot/P50909 P50909]
 
−
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 
−
** [http://www.uniprot.org/uniprot/P51382 P51382]
 
−
** [http://www.uniprot.org/uniprot/P77960 P77960]
 
−
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 
−
** [http://www.uniprot.org/uniprot/O22765 O22765]
 
−
** [http://www.uniprot.org/uniprot/O04225 O04225]
 
−
** [http://www.uniprot.org/uniprot/P25269 P25269]
 
−
** [http://www.uniprot.org/uniprot/O64991 O64991]
 
−
** [http://www.uniprot.org/uniprot/O05625 O05625]
 
−
** [http://www.uniprot.org/uniprot/O13831 O13831]
 
−
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 
−
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 
−
** [http://www.uniprot.org/uniprot/P00931 P00931]
 
−
** [http://www.uniprot.org/uniprot/P00929 P00929]
 
−
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 
−
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 
−
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=tryptophan synthase}}
+
{{#set: common-name=thioredoxin-disulfide reductase|thioredoxin reductase}}
−
{{#set: ec-number=ec-4.2.1.20}}
+
{{#set: ec-number=ec-1.8.1.9}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=13}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:08, 5 January 2021

Reaction THIOREDOXIN-REDUCT-NADPH-RXN

  • direction:
    • left-to-right
  • common-name:
    • thioredoxin-disulfide reductase
    • thioredoxin reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • THIOREDOX-PWY, thioredoxin pathway:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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