Difference between revisions of "3.2.1.75-RXN"

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(Created page with "Category:reaction == Reaction ALCOHOL-DEHYDROG-RXN == * direction: ** reversible * common-name: ** alcohol dehydrogenase (nad) ** alcohol dehydrogenase * ec-number: ** [ht...")
(Created page with "Category:reaction == Reaction SHIKIMATE-5-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** shikimate dehydrogenase * ec-number: ** [http://enzyme.expas...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ALCOHOL-DEHYDROG-RXN ==
+
== Reaction SHIKIMATE-5-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** alcohol dehydrogenase (nad)
+
** shikimate dehydrogenase
−
** alcohol dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.1 ec-1.1.1.1]
+
** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ETOH]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[ACETALD]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07759]]
+
* Gene: [[SJ10493]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21601]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14768]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
−
* [[PWY-6587]], pyruvate fermentation to ethanol III:
+
** '''6''' reactions found over '''5''' reactions in the full pathway
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5480]], pyruvate fermentation to ethanol I:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[P161-PWY]], acetylene degradation (anaerobic):
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-6333]], acetaldehyde biosynthesis I:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5486]], pyruvate fermentation to ethanol II:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation:
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY66-21]], ethanol degradation II:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[ETOH-ACETYLCOA-ANA-PWY]], ethanol degradation I:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7118]], chitin degradation to ethanol:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25293 25293]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17739 17739]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00754 R00754]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=alcohol dehydrogenase|alcohol dehydrogenase (nad)}}
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
−
{{#set: ec-number=ec-1.1.1.1}}
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/Q58484 Q58484]
−
{{#set: nb pathway associated=11}}
+
** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
 +
** [http://www.uniprot.org/uniprot/Q44606 Q44606]
 +
** [http://www.uniprot.org/uniprot/Q44608 Q44608]
 +
** [http://www.uniprot.org/uniprot/Q44609 Q44609]
 +
** [http://www.uniprot.org/uniprot/Q44610 Q44610]
 +
** [http://www.uniprot.org/uniprot/Q44611 Q44611]
 +
** [http://www.uniprot.org/uniprot/Q44612 Q44612]
 +
** [http://www.uniprot.org/uniprot/P15770 P15770]
 +
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
 +
** [http://www.uniprot.org/uniprot/O65917 O65917]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=shikimate dehydrogenase}}
 +
{{#set: ec-number=ec-1.1.1.25}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:07, 5 January 2021

Reaction SHIKIMATE-5-DEHYDROGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • shikimate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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