Difference between revisions of "3.2.1.75-RXN"

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(Created page with "Category:reaction == Reaction SHIKIMATE-5-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** shikimate dehydrogenase * ec-number: ** [http://enzyme.expas...")
(Created page with "Category:reaction == Reaction GLYCINE-AMINOTRANSFERASE-RXN == * direction: ** reversible * common-name: ** glycine transaminase * ec-number: ** [http://enzyme.expasy.org/E...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SHIKIMATE-5-DEHYDROGENASE-RXN ==
+
== Reaction GLYCINE-AMINOTRANSFERASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** shikimate dehydrogenase
+
** glycine transaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25]
+
** [http://enzyme.expasy.org/EC/2.6.1.4 ec-2.6.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLY]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[GLYOX]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10493]]
+
* Gene: [[SJ19809]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
+
* [[PWY-181]], photorespiration:
−
** '''6''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17739 17739]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14092 14092]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00372 R00372]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
{{#set: common-name=glycine transaminase}}
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
+
{{#set: ec-number=ec-2.6.1.4}}
−
** [http://www.uniprot.org/uniprot/Q58484 Q58484]
 
−
** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
 
−
** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
 
−
** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
 
−
** [http://www.uniprot.org/uniprot/Q44606 Q44606]
 
−
** [http://www.uniprot.org/uniprot/Q44608 Q44608]
 
−
** [http://www.uniprot.org/uniprot/Q44609 Q44609]
 
−
** [http://www.uniprot.org/uniprot/Q44610 Q44610]
 
−
** [http://www.uniprot.org/uniprot/Q44611 Q44611]
 
−
** [http://www.uniprot.org/uniprot/Q44612 Q44612]
 
−
** [http://www.uniprot.org/uniprot/P15770 P15770]
 
−
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
 
−
** [http://www.uniprot.org/uniprot/O65917 O65917]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=shikimate dehydrogenase}}
 
−
{{#set: ec-number=ec-1.1.1.25}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
Line 56: Line 34:
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 15:37, 5 January 2021

Reaction GLYCINE-AMINOTRANSFERASE-RXN

  • direction:
    • reversible
  • common-name:
    • glycine transaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-181, photorespiration:
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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