Difference between revisions of "3.4.22.15-RXN"

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(Created page with "Category:reaction == Reaction TRIOSEPISOMERIZATION-RXN == * direction: ** reversible * common-name: ** triosephosphate isomerase ** triose-phosphate isomerase * ec-number:...")
(Created page with "Category:reaction == Reaction AKGDHe2r == * direction: ** reversible * common-name: ** 2-oxoglutarate dehydrogenase e2 component == Reaction formula == * 1.0 CO-A[m] '...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRIOSEPISOMERIZATION-RXN ==
+
== Reaction AKGDHe2r ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** triosephosphate isomerase
+
** 2-oxoglutarate dehydrogenase e2 component
−
** triose-phosphate isomerase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/5.3.1.1 ec-5.3.1.1]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GAP]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c]
+
* 1.0 [[CO-A]][m] '''+''' 1.0 [[CPD0-341]][m] '''+''' 1.0 [[PROTON]][m] '''<=>''' 1.0 [[DIHYDROLIPOAMIDE]][m] '''+''' 1.0 [[SUC-COA]][m]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ19201]]
−
* Gene: [[SJ10351]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11011]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ15388]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07665]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21027]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV (plant cytosol):
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P341-PWY]], glycolysis V (Pyrococcus):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY66-399]], gluconeogenesis III:
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY66-373]], sucrose degradation V (sucrose &alpha;-glucosidase):
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7003]], glycerol degradation to butanol:
 
−
** '''8''' reactions found over '''6''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18588 18588]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01015 R01015]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P19118 P19118]
 
−
** [http://www.uniprot.org/uniprot/P21820 P21820]
 
−
** [http://www.uniprot.org/uniprot/P48501 P48501]
 
−
** [http://www.uniprot.org/uniprot/P62002 P62002]
 
−
** [http://www.uniprot.org/uniprot/O27120 O27120]
 
−
** [http://www.uniprot.org/uniprot/P27876 P27876]
 
−
** [http://www.uniprot.org/uniprot/Q9PMQ6 Q9PMQ6]
 
−
** [http://www.uniprot.org/uniprot/P19583 P19583]
 
−
** [http://www.uniprot.org/uniprot/Q9UXX2 Q9UXX2]
 
−
** [http://www.uniprot.org/uniprot/P47721 P47721]
 
−
** [http://www.uniprot.org/uniprot/P47670 P47670]
 
−
** [http://www.uniprot.org/uniprot/P50918 P50918]
 
−
** [http://www.uniprot.org/uniprot/P43727 P43727]
 
−
** [http://www.uniprot.org/uniprot/Q58923 Q58923]
 
−
** [http://www.uniprot.org/uniprot/O28965 O28965]
 
−
** [http://www.uniprot.org/uniprot/Q59182 Q59182]
 
−
** [http://www.uniprot.org/uniprot/O59536 O59536]
 
−
** [http://www.uniprot.org/uniprot/P36204 P36204]
 
−
** [http://www.uniprot.org/uniprot/Q9JW31 Q9JW31]
 
−
** [http://www.uniprot.org/uniprot/P04828 P04828]
 
−
** [http://www.uniprot.org/uniprot/P00943 P00943]
 
−
** [http://www.uniprot.org/uniprot/P00942 P00942]
 
−
** [http://www.uniprot.org/uniprot/P00940 P00940]
 
−
** [http://www.uniprot.org/uniprot/P60175 P60175]
 
−
** [http://www.uniprot.org/uniprot/P0A858 P0A858]
 
−
** [http://www.uniprot.org/uniprot/P60174 P60174]
 
−
** [http://www.uniprot.org/uniprot/P00941 P00941]
 
−
** [http://www.uniprot.org/uniprot/P15426 P15426]
 
−
** [http://www.uniprot.org/uniprot/P17751 P17751]
 
−
** [http://www.uniprot.org/uniprot/P00939 P00939]
 
−
** [http://www.uniprot.org/uniprot/P12863 P12863]
 
−
** [http://www.uniprot.org/uniprot/P07669 P07669]
 
−
** [http://www.uniprot.org/uniprot/P35144 P35144]
 
−
** [http://www.uniprot.org/uniprot/P48494 P48494]
 
−
** [http://www.uniprot.org/uniprot/Q7M4X7 Q7M4X7]
 
−
** [http://www.uniprot.org/uniprot/P29613 P29613]
 
−
** [http://www.uniprot.org/uniprot/P30741 P30741]
 
−
** [http://www.uniprot.org/uniprot/Q01893 Q01893]
 
−
** [http://www.uniprot.org/uniprot/P48499 P48499]
 
−
** [http://www.uniprot.org/uniprot/P48496 P48496]
 
−
** [http://www.uniprot.org/uniprot/P46226 P46226]
 
−
** [http://www.uniprot.org/uniprot/P46225 P46225]
 
−
** [http://www.uniprot.org/uniprot/P48492 P48492]
 
−
** [http://www.uniprot.org/uniprot/Q56738 Q56738]
 
−
** [http://www.uniprot.org/uniprot/Q7LZE5 Q7LZE5]
 
−
** [http://www.uniprot.org/uniprot/P46711 P46711]
 
−
** [http://www.uniprot.org/uniprot/O32757 O32757]
 
−
** [http://www.uniprot.org/uniprot/O74067 O74067]
 
−
** [http://www.uniprot.org/uniprot/P48491 P48491]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=triose-phosphate isomerase|triosephosphate isomerase}}
+
{{#set: common-name=2-oxoglutarate dehydrogenase e2 component}}
−
{{#set: ec-number=ec-5.3.1.1}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=12}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 13:21, 14 January 2021

Reaction AKGDHe2r

  • direction:
    • reversible
  • common-name:
    • 2-oxoglutarate dehydrogenase e2 component

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=3.4.22.15-RXN&oldid=91063"