Difference between revisions of "4-NITROPHENYLPHOSPHATASE-RXN"
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(Created page with "Category:reaction == Reaction RXN-16135 == * direction: ** left-to-right * common-name: ** enoyl-coa hydratase ** (2e,6z,9z,12z,15z,18z,21z)-tetracosaheptaenoyl-coa hydrat...") |
(Created page with "Category:reaction == Reaction IGPSYN-RXN == * direction: ** left-to-right * common-name: ** indole-3-glycerol phosphate synthase * ec-number: ** [http://enzyme.expasy.org/...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction IGPSYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** indole-3-glycerol phosphate synthase |
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/4. | + | ** [http://enzyme.expasy.org/EC/4.1.1.48 ec-4.1.1.48] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ01083]] | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ17722]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ04593]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY | + | * [[TRPSYN-PWY]], L-tryptophan biosynthesis: |
− | ** ''' | + | ** '''6''' reactions found over '''6''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR100814 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23477 23477] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P42393 P42393] | ||
+ | ** [http://www.uniprot.org/uniprot/P20577 P20577] | ||
+ | ** [http://www.uniprot.org/uniprot/P18304 P18304] | ||
+ | ** [http://www.uniprot.org/uniprot/Q06121 Q06121] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3] | ||
+ | ** [http://www.uniprot.org/uniprot/P20578 P20578] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58328 Q58328] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4] | ||
+ | ** [http://www.uniprot.org/uniprot/P03964 P03964] | ||
+ | ** [http://www.uniprot.org/uniprot/P00910 P00910] | ||
+ | ** [http://www.uniprot.org/uniprot/P00909 P00909] | ||
+ | ** [http://www.uniprot.org/uniprot/P00911 P00911] | ||
+ | ** [http://www.uniprot.org/uniprot/P17217 P17217] | ||
+ | ** [http://www.uniprot.org/uniprot/P20409 P20409] | ||
+ | ** [http://www.uniprot.org/uniprot/P00937 P00937] | ||
+ | ** [http://www.uniprot.org/uniprot/P00908 P00908] | ||
+ | ** [http://www.uniprot.org/uniprot/P05328 P05328] | ||
+ | ** [http://www.uniprot.org/uniprot/P06531 P06531] | ||
+ | ** [http://www.uniprot.org/uniprot/P18483 P18483] | ||
+ | ** [http://www.uniprot.org/uniprot/P25170 P25170] | ||
+ | ** [http://www.uniprot.org/uniprot/P26938 P26938] | ||
+ | ** [http://www.uniprot.org/uniprot/P24773 P24773] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01999 Q01999] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S591 Q9S591] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92370 Q92370] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7] | ||
+ | ** [http://www.uniprot.org/uniprot/P94327 P94327] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=indole-3-glycerol phosphate synthase}} |
− | {{#set: ec-number=ec-4. | + | {{#set: ec-number=ec-4.1.1.48}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category=annotation | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} |
Revision as of 08:38, 15 March 2021
Contents
Reaction IGPSYN-RXN
- direction:
- left-to-right
- common-name:
- indole-3-glycerol phosphate synthase
- ec-number:
Reaction formula
- 1 CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P[c] + 1 PROTON[c] => 1 CARBON-DIOXIDE[c] + 1 INDOLE-3-GLYCEROL-P[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ01083
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ17722
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04593
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- TRPSYN-PWY, L-tryptophan biosynthesis:
- 6 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links