Difference between revisions of "4.2.1.58-RXN"

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(Created page with "Category:reaction == Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** trna(m5u54)methyltransferase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction RXN-12710 == * direction: ** left-to-right * common-name: ** 3-oxoacyl coa thiolase ** acetyl-coa c-acyltransferase * ec-number: ** [http://e...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction TRNA-URACIL-5--METHYLTRANSFERASE-RXN ==
+
== Reaction RXN-12710 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** trna(m5u54)methyltransferase
+
** 3-oxoacyl coa thiolase
 +
** acetyl-coa c-acyltransferase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.1.1.35 ec-2.1.1.35]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Uracil-54-in-tRNA]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[tRNA-containing-5Me-uridine54]][c]
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* 1 [[CO-A]][c] '''+''' 1 [[CPD-13699]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-13700]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ03220]]
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* Gene: [[SJ16470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21817]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14898]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21818]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09371]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6945]], cholesterol degradation to androstenedione I (cholesterol oxidase):
 +
** '''5''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6946]], cholesterol degradation to androstenedione II (cholesterol dehydrogenase):
 +
** '''6''' reactions found over '''22''' reactions in the full pathway
 +
* [[PWY-6948]], sitosterol degradation to androstenedione:
 +
** '''2''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
+
* METANETX-RXN : MNXR117712
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42713 42713]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00594 R00594]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P23003 P23003]
 
** [http://www.uniprot.org/uniprot/P31812 P31812]
 
** [http://www.uniprot.org/uniprot/Q9PP92 Q9PP92]
 
** [http://www.uniprot.org/uniprot/Q9JT82 Q9JT82]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=trna(m5u54)methyltransferase}}
+
{{#set: common-name=acetyl-coa c-acyltransferase|3-oxoacyl coa thiolase}}
{{#set: ec-number=ec-2.1.1.35}}
+
{{#set: ec-number=ec-2.3.1.16}}
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 08:35, 15 March 2021

Reaction RXN-12710

  • direction:
    • left-to-right
  • common-name:
    • 3-oxoacyl coa thiolase
    • acetyl-coa c-acyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6945, cholesterol degradation to androstenedione I (cholesterol oxidase):
    • 5 reactions found over 17 reactions in the full pathway
  • PWY-6946, cholesterol degradation to androstenedione II (cholesterol dehydrogenase):
    • 6 reactions found over 22 reactions in the full pathway
  • PWY-6948, sitosterol degradation to androstenedione:
    • 2 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117712