Difference between revisions of "4.2.3.12-RXN"

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(Created page with "Category:reaction == Reaction 4.2.3.12-RXN == * direction: ** left-to-right * common-name: ** 6-pyruvoyl-tetrahydropterin synthase * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction RXN66-320 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5] == Reaction formula == * 1 ZYMO...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 4.2.3.12-RXN ==
+
== Reaction RXN66-320 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** 6-pyruvoyl-tetrahydropterin synthase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/4.2.3.12 ec-4.2.3.12]
+
** [http://enzyme.expasy.org/EC/5.3.3.5 ec-5.3.3.5]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[DIHYDRONEOPTERIN-P3]][c] '''=>''' 1 [[6-PYRUVOYL-5678-TETRAHYDROPTERIN]][c] '''+''' 1 [[P3I]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ZYMOSTEROL]][c] '''=>''' 1 [[5-ALPHA-CHOLESTA-724-DIEN-3-BETA-OL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ00075]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ00496]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-7442]], drosopterin and aurodrosopterin biosynthesis:
+
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol):
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''14''' reactions found over '''4''' reactions in the full pathway
* [[PWY-5663]], erythro-tetrahydrobiopterin biosynthesis I:
+
* [[PWY66-341]], cholesterol biosynthesis I:
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''14''' reactions found over '''18''' reactions in the full pathway
* [[PWY-5664]], erythro-tetrahydrobiopterin biosynthesis II:
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-6983]], threo-tetrahydrobiopterin biosynthesis:
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_sjap]]; tool: [[curation]]; comment: curation sterols (girard et al.)
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR109128
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22049 22049]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34000 34000]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R04286 R04286]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04804 R04804]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=6-pyruvoyl-tetrahydropterin synthase}}
+
{{#set: ec-number=ec-5.3.3.5}}
{{#set: ec-number=ec-4.2.3.12}}
+
{{#set: nb gene associated=0}}
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=2}}
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction category=gap-filling|manual}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=curation|meneco}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction comment=added for gapfilling|curation sterols (girard et al.)}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_sjap|gapfilling_solution_with_meneco_draft_medium}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 08:40, 15 March 2021

Reaction RXN66-320

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-4, cholesterol biosynthesis III (via desmosterol):
    • 14 reactions found over 4 reactions in the full pathway
  • PWY66-341, cholesterol biosynthesis I:
    • 14 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR109128
  • RHEA:
  • LIGAND-RXN: