Difference between revisions of "ACACT6"

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(Created page with "Category:reaction == Reaction ACONITATEHYDR-RXN == * direction: ** reversible * common-name: ** cis-aconitate hydratase ** d-threo-isocitrate hydro-lyase (cis-aconitate-fo...")
(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** nad-dependent glutamate dehydrogenase * ec-number: ** [http://enz...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACONITATEHYDR-RXN ==
+
== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** cis-aconitate hydratase
+
** nad-dependent glutamate dehydrogenase
−
** d-threo-isocitrate hydro-lyase (cis-aconitate-forming)
+
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18471]]
+
* Gene: [[SJ00250]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ22396]]
+
* Gene: [[SJ20174]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10621]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
−
* [[PWY-6549]], L-glutamine biosynthesis III:
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
−
* [[PWY-5392]], reductive TCA cycle II:
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
** '''6''' reactions found over '''12''' reactions in the full pathway
+
* [[PWY-5022]], 4-aminobutanoate degradation V:
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7126]], ethylene biosynthesis IV (engineered):
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic):
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
 
* [[PWY-6728]], methylaspartate cycle:
 
* [[PWY-6728]], methylaspartate cycle:
 
** '''11''' reactions found over '''19''' reactions in the full pathway
 
** '''11''' reactions found over '''19''' reactions in the full pathway
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
+
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''7''' reactions found over '''11''' reactions in the full pathway
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P20016 P20016]
 +
** [http://www.uniprot.org/uniprot/P28997 P28997]
 +
** [http://www.uniprot.org/uniprot/P41755 P41755]
 +
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
 +
** [http://www.uniprot.org/uniprot/P00365 P00365]
 +
** [http://www.uniprot.org/uniprot/P93541 P93541]
 +
** [http://www.uniprot.org/uniprot/P80319 P80319]
 +
** [http://www.uniprot.org/uniprot/P24295 P24295]
 +
** [http://www.uniprot.org/uniprot/P27346 P27346]
 +
** [http://www.uniprot.org/uniprot/P33327 P33327]
 +
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
 +
** [http://www.uniprot.org/uniprot/O04937 O04937]
 +
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
 +
** [http://www.uniprot.org/uniprot/O74024 O74024]
 +
** [http://www.uniprot.org/uniprot/O59650 O59650]
 +
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=d-threo-isocitrate hydro-lyase (cis-aconitate-forming)|cis-aconitate hydratase}}
+
{{#set: common-name=nad-dependent glutamate dehydrogenase}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-1.4.1.2}}
−
{{#set: nb pathway associated=15}}
+
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=6}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:38, 5 January 2021

Reaction GLUTAMATE-DEHYDROGENASE-RXN

  • direction:
    • reversible
  • common-name:
    • nad-dependent glutamate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I:
    • 1 reactions found over 1 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7126, ethylene biosynthesis IV (engineered):
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 11 reactions found over 19 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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