Difference between revisions of "ACONITATEDEHYDR-RXN"
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(Created page with "Category:reaction == Reaction RNA-DIRECTED-RNA-POLYMERASE-RXN == * direction: ** reversible * common-name: ** rna-directed 5'-3' rna polymerase * ec-number: ** [http://enz...") |
(Created page with "Category:reaction == Reaction ACONITATEDEHYDR-RXN == * direction: ** reversible * common-name: ** citrate hydro-lyase (cis-aconitate-forming) == Reaction formula == * 1 ...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction ACONITATEDEHYDR-RXN == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
* common-name: | * common-name: | ||
| − | ** | + | ** citrate hydro-lyase (cis-aconitate-forming) |
| − | |||
| − | |||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ18471]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ22396]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
| + | * [[TCA]], TCA cycle I (prokaryotic): | ||
| + | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
| + | * [[PWY-6549]], L-glutamine biosynthesis III: | ||
| + | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-5392]], reductive TCA cycle II: | ||
| + | ** '''6''' reactions found over '''12''' reactions in the full pathway | ||
| + | * [[PWY-5690]], TCA cycle II (plants and fungi): | ||
| + | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): | ||
| + | ** '''10''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[REDCITCYC]], TCA cycle VI (Helicobacter): | ||
| + | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY66-398]], TCA cycle III (animals): | ||
| + | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
| + | * [[PWY-7254]], TCA cycle VII (acetate-producers): | ||
| + | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase): | ||
| + | ** '''10''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[FERMENTATION-PWY]], mixed acid fermentation: | ||
| + | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
| + | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: | ||
| + | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-5750]], itaconate biosynthesis I: | ||
| + | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): | ||
| + | ** '''10''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[P23-PWY]], reductive TCA cycle I: | ||
| + | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
| + | * [[PWY-7124]], ethene biosynthesis V (engineered): | ||
| + | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-6728]], methylaspartate cycle: | ||
| + | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
| + | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| Line 33: | Line 56: | ||
== External links == | == External links == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
| + | * METANETX-RXN : MNXR95386 | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231] | ||
| + | * PIR: | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101] | ||
| + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543] | ||
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/P16276 P16276] | ||
| + | ** [http://www.uniprot.org/uniprot/Q01059 Q01059] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5] | ||
| + | ** [http://www.uniprot.org/uniprot/P37032 P37032] | ||
| + | ** [http://www.uniprot.org/uniprot/P81291 P81291] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88] | ||
| + | ** [http://www.uniprot.org/uniprot/P36683 P36683] | ||
| + | ** [http://www.uniprot.org/uniprot/O53166 O53166] | ||
| + | ** [http://www.uniprot.org/uniprot/P25516 P25516] | ||
| + | ** [http://www.uniprot.org/uniprot/P09339 P09339] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05] | ||
| + | ** [http://www.uniprot.org/uniprot/Q99798 Q99798] | ||
| + | ** [http://www.uniprot.org/uniprot/P28271 P28271] | ||
| + | ** [http://www.uniprot.org/uniprot/P21399 P21399] | ||
| + | ** [http://www.uniprot.org/uniprot/Q42669 Q42669] | ||
| + | ** [http://www.uniprot.org/uniprot/P19414 P19414] | ||
| + | ** [http://www.uniprot.org/uniprot/P20004 P20004] | ||
| + | ** [http://www.uniprot.org/uniprot/P49609 P49609] | ||
| + | ** [http://www.uniprot.org/uniprot/P74582 P74582] | ||
| + | ** [http://www.uniprot.org/uniprot/Q42560 Q42560] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36] | ||
| + | ** [http://www.uniprot.org/uniprot/O04916 O04916] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325] |
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</div> | </div> | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=citrate hydro-lyase (cis-aconitate-forming)}} |
| − | + | {{#set: nb gene associated=2}} | |
| − | {{#set: nb gene associated= | + | {{#set: nb pathway associated=16}} |
| − | {{#set: nb pathway associated= | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction category=annotation | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
| − | {{#set: reconstruction tool=pathwaytools | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:25, 18 March 2021
Contents
Reaction ACONITATEDEHYDR-RXN
- direction:
- reversible
- common-name:
- citrate hydro-lyase (cis-aconitate-forming)
Reaction formula
- 1 CIT[c] <=> 1 CIS-ACONITATE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ18471
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ22396
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- TCA, TCA cycle I (prokaryotic):
- 9 reactions found over 10 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III:
- 8 reactions found over 9 reactions in the full pathway
- PWY-5392, reductive TCA cycle II:
- 6 reactions found over 12 reactions in the full pathway
- PWY-5690, TCA cycle II (plants and fungi):
- 8 reactions found over 9 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
- 10 reactions found over 9 reactions in the full pathway
- REDCITCYC, TCA cycle VI (Helicobacter):
- 5 reactions found over 9 reactions in the full pathway
- PWY66-398, TCA cycle III (animals):
- 10 reactions found over 10 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers):
- 7 reactions found over 9 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate synthase):
- 10 reactions found over 9 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation:
- 11 reactions found over 16 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle:
- 6 reactions found over 6 reactions in the full pathway
- PWY-5750, itaconate biosynthesis I:
- 3 reactions found over 2 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs):
- 10 reactions found over 8 reactions in the full pathway
- P23-PWY, reductive TCA cycle I:
- 9 reactions found over 12 reactions in the full pathway
- PWY-7124, ethene biosynthesis V (engineered):
- 8 reactions found over 8 reactions in the full pathway
- PWY-6728, methylaspartate cycle:
- 11 reactions found over 19 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- METANETX-RXN : MNXR95386
- RHEA:
- PIR:
- UNIPROT:
- LIGAND-RXN:
