Difference between revisions of "ACONITATEDEHYDR-RXN"

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(Created page with "Category:reaction == Reaction PHOSPHATIDYLCHOLINE-DESATURASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.19.22 ec-1.14.19.22] ==...")
(Created page with "Category:reaction == Reaction ACONITATEDEHYDR-RXN == * direction: ** reversible * common-name: ** citrate hydro-lyase (cis-aconitate-forming) == Reaction formula == * 1 ...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction PHOSPHATIDYLCHOLINE-DESATURASE-RXN ==
+
== Reaction ACONITATEDEHYDR-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* ec-number:
+
* common-name:
** [http://enzyme.expasy.org/EC/1.14.19.22 ec-1.14.19.22]
+
** citrate hydro-lyase (cis-aconitate-forming)
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[1-ACYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHOCHOL]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[1-ACYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOC]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ00667]]
+
* Gene: [[SJ18471]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22396]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II:
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 +
** '''10''' reactions found over '''9''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals):
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase):
 +
** '''10''' reactions found over '''9''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5750]], itaconate biosynthesis I:
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7124]], ethene biosynthesis V (engineered):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR95386
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12564 12564]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P16276 P16276]
 +
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
 +
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 +
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
 +
** [http://www.uniprot.org/uniprot/P37032 P37032]
 +
** [http://www.uniprot.org/uniprot/P81291 P81291]
 +
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 +
** [http://www.uniprot.org/uniprot/P36683 P36683]
 +
** [http://www.uniprot.org/uniprot/O53166 O53166]
 +
** [http://www.uniprot.org/uniprot/P25516 P25516]
 +
** [http://www.uniprot.org/uniprot/P09339 P09339]
 +
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 +
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 +
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 +
** [http://www.uniprot.org/uniprot/P28271 P28271]
 +
** [http://www.uniprot.org/uniprot/P21399 P21399]
 +
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 +
** [http://www.uniprot.org/uniprot/P19414 P19414]
 +
** [http://www.uniprot.org/uniprot/P20004 P20004]
 +
** [http://www.uniprot.org/uniprot/P49609 P49609]
 +
** [http://www.uniprot.org/uniprot/P74582 P74582]
 +
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 +
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 +
** [http://www.uniprot.org/uniprot/O04916 O04916]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R03475 R03475]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
* UNIPROT:
+
</div>
** [http://www.uniprot.org/uniprot/P20388 P20388]
+
{{#set: direction=reversible}}
** [http://www.uniprot.org/uniprot/Q55230 Q55230]
+
{{#set: common-name=citrate hydro-lyase (cis-aconitate-forming)}}
** [http://www.uniprot.org/uniprot/Q55231 Q55231]
+
{{#set: nb gene associated=2}}
** [http://www.uniprot.org/uniprot/Q44503 Q44503]
+
{{#set: nb pathway associated=16}}
{{#set: direction=left-to-right}}
+
{{#set: reconstruction category=orthology|annotation}}
{{#set: ec-number=ec-1.14.19.22}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction ACONITATEDEHYDR-RXN

  • direction:
    • reversible
  • common-name:
    • citrate hydro-lyase (cis-aconitate-forming)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TCA, TCA cycle I (prokaryotic):
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 10 reactions found over 9 reactions in the full pathway
  • REDCITCYC, TCA cycle VI (Helicobacter):
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate synthase):
    • 10 reactions found over 9 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 11 reactions found over 16 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5750, itaconate biosynthesis I:
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 8 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-7124, ethene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 11 reactions found over 19 reactions in the full pathway

Reconstruction information

External links