Difference between revisions of "AICARSYN-RXN"

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(Created page with "Category:reaction == Reaction CITSYN-RXN == * direction: ** left-to-right * common-name: ** citrate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3...")
(Created page with "Category:reaction == Reaction RXN-6883 == * direction: ** left-to-right * common-name: ** ubiquinol:oxygen oxidoreductase * ec-number: ** [http://enzyme.expasy.org/EC/1.10...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction CITSYN-RXN ==
+
== Reaction RXN-6883 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** citrate synthase
+
** ubiquinol:oxygen oxidoreductase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16]
+
** [http://enzyme.expasy.org/EC/1.10.3.11 ec-1.10.3.11]
** [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1]
 
* synonymous:
 
** citrate synthesis
 
** condensing enzyme
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ACETYL-COA]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CIT]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[Ubiquinols]][c] '''=>''' 2 [[Ubiquinones]][c] '''+''' 2 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ02212]]
+
* Gene: [[SJ08130]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12321]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00758]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-4302]], aerobic respiration III (alternative oxidase pathway):
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
+
** '''3''' reactions found over '''3''' reactions in the full pathway
** '''10''' reactions found over '''11''' reactions in the full pathway
 
* [[TCA]], TCA cycle I (prokaryotic):
 
** '''9''' reactions found over '''10''' reactions in the full pathway
 
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
 
** '''5''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY66-398]], TCA cycle III (animals):
 
** '''10''' reactions found over '''10''' reactions in the full pathway
 
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
** '''10''' reactions found over '''12''' reactions in the full pathway
 
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
** '''10''' reactions found over '''11''' reactions in the full pathway
 
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
** '''11''' reactions found over '''16''' reactions in the full pathway
 
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
** '''8''' reactions found over '''8''' reactions in the full pathway
 
* [[PWY-6728]], methylaspartate cycle:
 
** '''11''' reactions found over '''19''' reactions in the full pathway
 
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-6549]], L-glutamine biosynthesis III:
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-5750]], itaconate biosynthesis I:
 
** '''3''' reactions found over '''2''' reactions in the full pathway
 
* [[PWY-5690]], TCA cycle II (plants and fungi):
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R00351 R00351]
+
** [http://www.genome.jp/dbget-bin/www_bget?R09504 R09504]
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16846 16846]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30258 30258]
* PIR:
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43936 A43936]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81200 A81200]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81139 B81139]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64760 E64760]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86708 F86708]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69600 G69600]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81265 G81265]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39506 I39506]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40044 I40044]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40380 I40380]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40717 I40717]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JQ1392 JQ1392]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PQ0046 PQ0046]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41527 S41527]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41563 S41563]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S42370 S42370]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44316 S44316]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52814 S52814]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02390 T02390]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09334 T09334]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44615 T44615]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBY YKBY]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBYC YKBYC]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKEC YKEC]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMUM YKMUM]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMY YKMY]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPG YKPG]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPSCA YKPSCA]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKQPC YKQPC]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKRECP YKRECP]
 
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKYT YKYT]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/Q9JRA5 Q9JRA5]
 
** [http://www.uniprot.org/uniprot/Q9JQX0 Q9JQX0]
 
** [http://www.uniprot.org/uniprot/P31660 P31660]
 
** [http://www.uniprot.org/uniprot/Q9CHQ6 Q9CHQ6]
 
** [http://www.uniprot.org/uniprot/P39120 P39120]
 
** [http://www.uniprot.org/uniprot/Q9PLZ5 Q9PLZ5]
 
** [http://www.uniprot.org/uniprot/P20902 P20902]
 
** [http://www.uniprot.org/uniprot/P51033 P51033]
 
** [http://www.uniprot.org/uniprot/P39119 P39119]
 
** [http://www.uniprot.org/uniprot/P42457 P42457]
 
** [http://www.uniprot.org/uniprot/P18789 P18789]
 
** [http://www.uniprot.org/uniprot/P20903 P20903]
 
** [http://www.uniprot.org/uniprot/P51038 P51038]
 
** [http://www.uniprot.org/uniprot/P34085 P34085]
 
** [http://www.uniprot.org/uniprot/P34575 P34575]
 
** [http://www.uniprot.org/uniprot/Q43175 Q43175]
 
** [http://www.uniprot.org/uniprot/P43635 P43635]
 
** [http://www.uniprot.org/uniprot/O24259 O24259]
 
** [http://www.uniprot.org/uniprot/O32705 O32705]
 
** [http://www.uniprot.org/uniprot/P00890 P00890]
 
** [http://www.uniprot.org/uniprot/P08679 P08679]
 
** [http://www.uniprot.org/uniprot/P0ABH7 P0ABH7]
 
** [http://www.uniprot.org/uniprot/Q47237 Q47237]
 
** [http://www.uniprot.org/uniprot/P20115 P20115]
 
** [http://www.uniprot.org/uniprot/P26491 P26491]
 
** [http://www.uniprot.org/uniprot/P00889 P00889]
 
** [http://www.uniprot.org/uniprot/P20901 P20901]
 
** [http://www.uniprot.org/uniprot/P09948 P09948]
 
** [http://www.uniprot.org/uniprot/P21553 P21553]
 
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=citrate synthase}}
+
{{#set: common-name=ubiquinol:oxygen oxidoreductase}}
{{#set: ec-number=ec-2.3.3.1|ec-2.3.3.16}}
+
{{#set: ec-number=ec-1.10.3.11}}
{{#set: synonymous=citrate synthesis|condensing enzyme}}
+
{{#set: nb gene associated=3}}
{{#set: nb gene associated=1}}
+
{{#set: nb pathway associated=1}}
{{#set: nb pathway associated=14}}
+
{{#set: reconstruction category=annotation|orthology}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:05, 14 January 2021

Reaction RXN-6883

  • direction:
    • left-to-right
  • common-name:
    • ubiquinol:oxygen oxidoreductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-4302, aerobic respiration III (alternative oxidase pathway):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links