Difference between revisions of "AICARSYN-RXN"

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(Created page with "Category:reaction == Reaction GTP-CYCLOHYDRO-I-RXN == * direction: ** left-to-right * common-name: ** gtp cyclohydrolase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4...")
(Created page with "Category:reaction == Reaction AICARSYN-RXN == * direction: ** reversible * common-name: ** 5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole lyase * ec-number: *...")
 
(4 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GTP-CYCLOHYDRO-I-RXN ==
+
== Reaction AICARSYN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** gtp cyclohydrolase
+
** 5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole lyase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.16 ec-3.5.4.16]
+
** [http://enzyme.expasy.org/EC/4.3.2.2 ec-4.3.2.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DIHYDRONEOPTERIN-P3]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE]][c] '''<=>''' 1 [[AICAR]][c] '''+''' 1 [[FUM]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00877]]
+
* Gene: [[SJ06544]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1433]], tetrahydromonapterin biosynthesis:
+
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7442]], drosopterin and aurodrosopterin biosynthesis:
+
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II:
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6703]], preQ0 biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7852]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium):
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I:
 
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5664]], erythro-tetrahydrobiopterin biosynthesis II:
+
* [[PWY-7234]], inosine-5'-phosphate biosynthesis III:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6983]], threo-tetrahydrobiopterin biosynthesis:
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5663]], erythro-tetrahydrobiopterin biosynthesis I:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR108966
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17473 17473]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23923 23923]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00424 R00424]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04559 R04559]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19465 P19465]
+
** [http://www.uniprot.org/uniprot/P21265 P21265]
−
** [http://www.uniprot.org/uniprot/P22288 P22288]
+
** [http://www.uniprot.org/uniprot/Q58339 Q58339]
−
** [http://www.uniprot.org/uniprot/P43866 P43866]
+
** [http://www.uniprot.org/uniprot/Q9CF40 Q9CF40]
−
** [http://www.uniprot.org/uniprot/P51594 P51594]
+
** [http://www.uniprot.org/uniprot/Q9PJ88 Q9PJ88]
−
** [http://www.uniprot.org/uniprot/P64207 P64207]
+
** [http://www.uniprot.org/uniprot/Q9JSP3 Q9JSP3]
−
** [http://www.uniprot.org/uniprot/Q9CGE3 Q9CGE3]
+
** [http://www.uniprot.org/uniprot/P0AB89 P0AB89]
−
** [http://www.uniprot.org/uniprot/O66603 O66603]
+
** [http://www.uniprot.org/uniprot/O65180 O65180]
−
** [http://www.uniprot.org/uniprot/P56462 P56462]
+
** [http://www.uniprot.org/uniprot/P12047 P12047]
−
** [http://www.uniprot.org/uniprot/P0A6T5 P0A6T5]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P50141 P50141]
+
{{#set: common-name=5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole lyase}}
−
** [http://www.uniprot.org/uniprot/P30793 P30793]
+
{{#set: ec-number=ec-4.3.2.2}}
−
** [http://www.uniprot.org/uniprot/P51601 P51601]
 
−
** [http://www.uniprot.org/uniprot/Q05915 Q05915]
 
−
** [http://www.uniprot.org/uniprot/P51597 P51597]
 
−
** [http://www.uniprot.org/uniprot/P51600 P51600]
 
−
** [http://www.uniprot.org/uniprot/Q94465 Q94465]
 
−
** [http://www.uniprot.org/uniprot/Q55759 Q55759]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=gtp cyclohydrolase}}
 
−
{{#set: ec-number=ec-3.5.4.16}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction AICARSYN-RXN

  • direction:
    • reversible
  • common-name:
    • 5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole lyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6123, inosine-5'-phosphate biosynthesis I:
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6124, inosine-5'-phosphate biosynthesis II:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7234, inosine-5'-phosphate biosynthesis III:
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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