Difference between revisions of "APIGNAR-RXN"

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(Created page with "Category:reaction == Reaction LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN == * direction: ** left-to-right * common-name: ** acyl-coa dehydrogenase * ec-number: ** [http://enz...")
(Created page with "Category:reaction == Reaction APIGNAR-RXN == * direction: ** left-to-right * common-name: ** naringenin chalcone isomerase ** chalcone isomerase * ec-number: ** [http://en...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN ==
+
== Reaction APIGNAR-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acyl-coa dehydrogenase
+
** naringenin chalcone isomerase
 +
** chalcone isomerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.50 ec-1.2.1.50]
+
** [http://enzyme.expasy.org/EC/5.5.1.6 ec-5.5.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Long-Chain-Acyl-CoAs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[Long-Chain-Aldehydes]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[CPD-20012]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ09285]]
−
* Gene: [[SJ01215]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03090]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21233]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07452]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06456]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07451]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19669]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07909]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21703]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07241]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13468]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04334]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15262]]
+
* Gene: [[SJ20427]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6787]], flavonoid biosynthesis (in equisetum):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7397]], naringenin biosynthesis (engineered):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7897]], flavonoid di-C-glucosylation:
 +
** '''3''' reactions found over '''15''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR116031
+
* METANETX-RXN : MNXR107511
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02620 R02620]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7M1E9 Q7M1E9]
+
** [http://www.uniprot.org/uniprot/P11650 P11650]
 +
** [http://www.uniprot.org/uniprot/P11651 P11651]
 +
** [http://www.uniprot.org/uniprot/P41088 P41088]
 +
** [http://www.uniprot.org/uniprot/P14298 P14298]
 +
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
 +
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
 +
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
 +
** [http://www.uniprot.org/uniprot/P28012 P28012]
 +
** [http://www.uniprot.org/uniprot/P41089 P41089]
 +
** [http://www.uniprot.org/uniprot/O81980 O81980]
 +
** [http://www.uniprot.org/uniprot/O22604 O22604]
 +
** [http://www.uniprot.org/uniprot/O22651 O22651]
 +
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acyl-coa dehydrogenase}}
+
{{#set: common-name=naringenin chalcone isomerase|chalcone isomerase}}
−
{{#set: ec-number=ec-1.2.1.50}}
+
{{#set: ec-number=ec-5.5.1.6}}
−
{{#set: nb gene associated=14}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction APIGNAR-RXN

  • direction:
    • left-to-right
  • common-name:
    • naringenin chalcone isomerase
    • chalcone isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY1F-FLAVSYN, flavonoid biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum):
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-7397, naringenin biosynthesis (engineered):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7897, flavonoid di-C-glucosylation:
    • 3 reactions found over 15 reactions in the full pathway

Reconstruction information

External links





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