Difference between revisions of "APIGNAR-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-3...")
(Created page with "Category:reaction == Reaction APIGNAR-RXN == * direction: ** left-to-right * common-name: ** naringenin chalcone isomerase ** chalcone isomerase * ec-number: ** [http://en...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129] ==
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== Reaction APIGNAR-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]
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** left-to-right
 
* common-name:
 
* common-name:
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** sphingolipid biosynthesis (plants)
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** naringenin chalcone isomerase
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== Reaction(s) found ==
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** chalcone isomerase
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* [[3-DEHYDROSPHINGANINE-REDUCTASE-RXN]]
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* ec-number:
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* [[RXN-7796]]
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** [http://enzyme.expasy.org/EC/5.5.1.6 ec-5.5.1.6]
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* [[SERINE-C-PALMITOYLTRANSFERASE-RXN]]
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== Reaction formula ==
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* [[SPHINGANINE-KINASE-RXN]]
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* 1 [[CPD-20012]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
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== Reaction(s) not found ==
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1380 RXN3O-1380]
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* Gene: [[SJ09285]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7798 RXN-7798]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7792 RXN-7792]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7801 RXN-7801]
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** Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7793 RXN-7793]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14250 RXN-14250]
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* Gene: [[SJ20427]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7795 RXN-7795]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11341 RXN-11341]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7799 RXN-7799]
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** Category: [[orthology]]
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{{#set: taxonomic-range=tax-33090}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=sphingolipid biosynthesis (plants)}}
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== Pathway(s) ==
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{{#set: nb reaction found=4}}
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
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{{#set: completion rate=0.31}}
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** '''5''' reactions found over '''5''' reactions in the full pathway
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{{#set: nb total reaction=13}}
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum):
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** '''6''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7397]], naringenin biosynthesis (engineered):
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7897]], flavonoid di-C-glucosylation:
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** '''3''' reactions found over '''15''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR107511
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P11650 P11650]
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** [http://www.uniprot.org/uniprot/P11651 P11651]
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** [http://www.uniprot.org/uniprot/P41088 P41088]
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** [http://www.uniprot.org/uniprot/P14298 P14298]
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** [http://www.uniprot.org/uniprot/Q42925 Q42925]
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** [http://www.uniprot.org/uniprot/Q42926 Q42926]
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** [http://www.uniprot.org/uniprot/Q08704 Q08704]
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** [http://www.uniprot.org/uniprot/P28012 P28012]
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** [http://www.uniprot.org/uniprot/P41089 P41089]
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** [http://www.uniprot.org/uniprot/O81980 O81980]
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** [http://www.uniprot.org/uniprot/O22604 O22604]
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** [http://www.uniprot.org/uniprot/O22651 O22651]
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** [http://www.uniprot.org/uniprot/Q43754 Q43754]
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{{#set: direction=left-to-right}}
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{{#set: common-name=naringenin chalcone isomerase|chalcone isomerase}}
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{{#set: ec-number=ec-5.5.1.6}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction APIGNAR-RXN

  • direction:
    • left-to-right
  • common-name:
    • naringenin chalcone isomerase
    • chalcone isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY1F-FLAVSYN, flavonoid biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum):
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-7397, naringenin biosynthesis (engineered):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7897, flavonoid di-C-glucosylation:
    • 3 reactions found over 15 reactions in the full pathway

Reconstruction information

External links





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