Difference between revisions of "APIGNAR-RXN"

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(Created page with "Category:reaction == Reaction HBCHLm == * direction: ** reversible * common-name: ** 3-hydroxybutanoyl-coa hydro-lyase, mitochondria == Reaction formula == * 1.0 S-3-HYD...")
(Created page with "Category:reaction == Reaction RXN-12243 == * direction: ** left-to-right * common-name: ** 15-cis-phytoene desaturase ** 15-cis phytoene desaturase * synonymous: ** plant-...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HBCHLm ==
+
== Reaction RXN-12243 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-hydroxybutanoyl-coa hydro-lyase, mitochondria
+
** 15-cis-phytoene desaturase
 +
** 15-cis phytoene desaturase
 +
* synonymous:
 +
** plant-type phytoene desaturase
 +
** pds
 +
** phytoene desaturase (ambiguous)
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[S-3-HYDROXYBUTANOYL-COA]][m] '''<=>''' 1.0 [[CROTONYL-COA]][m] '''+''' 1.0 [[WATER]][m]
+
* 1 [[CPD-12321]][c] '''+''' 1 [[PLASTOQUINONE]][c] '''=>''' 1 [[CPD-13171]][c] '''+''' 1 [[Plastoquinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00040]]
+
* Gene: [[SJ08891]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ21390]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* RHEA:
−
{{#set: common-name=3-hydroxybutanoyl-coa hydro-lyase, mitochondria}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30194 30194]
−
{{#set: nb gene associated=2}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=0}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R09653 R09653]
−
{{#set: reconstruction category=orthology}}
+
{{#set: direction=left-to-right}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: common-name=15-cis-phytoene desaturase|15-cis phytoene desaturase}}
 +
{{#set: synonymous=pds|plant-type phytoene desaturase|phytoene desaturase (ambiguous)}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:20, 14 January 2021

Reaction RXN-12243

  • direction:
    • left-to-right
  • common-name:
    • 15-cis-phytoene desaturase
    • 15-cis phytoene desaturase
  • synonymous:
    • plant-type phytoene desaturase
    • pds
    • phytoene desaturase (ambiguous)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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