Difference between revisions of "ATDCD"

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(Created page with "Category:reaction == Reaction RIBOFLAVINSYNDEAM-RXN == * direction: ** left-to-right * common-name: ** diaminohydroxyphosphoribosylaminopyrimidine deaminase * ec-number: *...")
(Created page with "Category:reaction == Reaction RXN-9914 == * direction: ** left-to-right * common-name: ** 5-chlorosalicylate 1-monooxygenase ** salicylate 1-monooxygenase * ec-number: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RIBOFLAVINSYNDEAM-RXN ==
+
== Reaction RXN-9914 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** diaminohydroxyphosphoribosylaminopyrimidine deaminase
+
** 5-chlorosalicylate 1-monooxygenase
 +
** salicylate 1-monooxygenase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/3.5.4.26 ec-3.5.4.26]
+
** [http://enzyme.expasy.org/EC/1.14.13.1 ec-1.14.13.1]
 +
* synonymous:
 +
** 5-chlorosalicylate hydroxylase
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c]
+
* 1 [[CPD-10663]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-9152]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ22508]]
+
* Gene: [[SJ21101]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ17550]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
+
* [[PWY-6107]], chlorosalicylate degradation:
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21869 21869]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=diaminohydroxyphosphoribosylaminopyrimidine deaminase}}
+
{{#set: common-name=salicylate 1-monooxygenase|5-chlorosalicylate 1-monooxygenase}}
{{#set: ec-number=ec-3.5.4.26}}
+
{{#set: ec-number=ec-1.14.13.1}}
{{#set: nb gene associated=2}}
+
{{#set: synonymous=5-chlorosalicylate hydroxylase}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:34, 5 January 2021

Reaction RXN-9914

  • direction:
    • left-to-right
  • common-name:
    • 5-chlorosalicylate 1-monooxygenase
    • salicylate 1-monooxygenase
  • ec-number:
  • synonymous:
    • 5-chlorosalicylate hydroxylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6107, chlorosalicylate degradation:
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links