Difference between revisions of "ATDTM"

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(Created page with "Category:reaction == Reaction BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN == * direction: ** reversible * common-name: ** benzaldehyde dehydrogenase (nad+) * ec-number: ** [http:/...")
(Created page with "Category:reaction == Reaction ENTDB-RXN == * direction: ** left-to-right * common-name: ** holo-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.expasy.org/E...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN ==
+
== Reaction ENTDB-RXN ==
 
* direction:
 
* direction:
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
** benzaldehyde dehydrogenase (nad+)
+
** holo-[acyl-carrier-protein] synthase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.2.1.28 ec-1.2.1.28]
+
** [http://enzyme.expasy.org/EC/2.7.8.7 ec-2.7.8.7]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[BENZALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[BENZOATE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[Apo-EntB]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[Holo-EntB]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ06456]]
+
* Gene: [[SJ00669]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
* Gene: [[SJ06470]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19702]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6766]], salicin biosynthesis:
+
* [[ENTBACSYN-PWY]], enterobactin biosynthesis:
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
* [[PWY-6763]], salicortin biosynthesis:
 
** '''1''' reactions found over '''11''' reactions in the full pathway
 
* [[PWY-6444]], benzoate biosynthesis II (CoA-independent, non-&beta;-oxidative):
 
** '''1''' reactions found over '''4''' reactions in the full pathway
 
* [[TOLUENE-DEG-CATECHOL-PWY]], toluene degradation to benzoate:
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY-1501]], mandelate degradation I:
 
** '''1''' reactions found over '''5''' reactions in the full pathway
 
* [[PWY-6446]], benzoate biosynthesis III (CoA-dependent, non-&beta;-oxidative):
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
** [http://www.genome.jp/dbget-bin/www_bget?R01419 R01419]
+
{{#set: common-name=holo-[acyl-carrier-protein] synthase}}
* UNIPROT:
+
{{#set: ec-number=ec-2.7.8.7}}
** [http://www.uniprot.org/uniprot/P43503 P43503]
 
{{#set: direction=reversible}}
 
{{#set: common-name=benzaldehyde dehydrogenase (nad+)}}
 
{{#set: ec-number=ec-1.2.1.28}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:03, 14 January 2021

Reaction ENTDB-RXN

  • direction:
    • left-to-right
  • common-name:
    • holo-[acyl-carrier-protein] synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ENTBACSYN-PWY, enterobactin biosynthesis:
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "holo-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.