Difference between revisions of "ATDTM"

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(Created page with "Category:reaction == Reaction BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN == * direction: ** reversible * common-name: ** benzaldehyde dehydrogenase (nad+) * ec-number: ** [http:/...")
(Created page with "Category:reaction == Reaction ATDTM == * direction: ** left-to-right * common-name: ** atp:dtmp phosphotransferase == Reaction formula == * 1.0 ATP[c] '''+''' 1.0 TM...")
 
(3 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN ==
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== Reaction ATDTM ==
 
* direction:
 
* direction:
−
** reversible
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** left-to-right
 
* common-name:
 
* common-name:
−
** benzaldehyde dehydrogenase (nad+)
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** atp:dtmp phosphotransferase
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.2.1.28 ec-1.2.1.28]
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[BENZALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[BENZOATE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
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* 1.0 [[ATP]][c] '''+''' 1.0 [[TMP]][c] '''=>''' 1.0 [[ADP]][c] '''+''' 1.0 [[CYTIDINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06456]]
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* Gene: [[SJ01455]]
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** Category: [[annotation]]
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** Category: [[orthology]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ06470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6766]], salicin biosynthesis:
 
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** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6763]], salicortin biosynthesis:
 
−
** '''1''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-6444]], benzoate biosynthesis II (CoA-independent, non-&beta;-oxidative):
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[TOLUENE-DEG-CATECHOL-PWY]], toluene degradation to benzoate:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-1501]], mandelate degradation I:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6446]], benzoate biosynthesis III (CoA-dependent, non-&beta;-oxidative):
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
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{{#set: direction=left-to-right}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01419 R01419]
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{{#set: common-name=atp:dtmp phosphotransferase}}
−
* UNIPROT:
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{{#set: nb gene associated=1}}
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** [http://www.uniprot.org/uniprot/P43503 P43503]
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{{#set: nb pathway associated=0}}
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{{#set: direction=reversible}}
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{{#set: reconstruction category=orthology}}
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{{#set: common-name=benzaldehyde dehydrogenase (nad+)}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: ec-number=ec-1.2.1.28}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=6}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:22, 18 March 2021

Reaction ATDTM

  • direction:
    • left-to-right
  • common-name:
    • atp:dtmp phosphotransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ATDTM&oldid=141750"