Difference between revisions of "ATDTM"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYPOXANPRIBOSYLTRAN-RXN HYPOXANPRIBOSYLTRAN-RXN] == * direction: ** left-to-right * common-name: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYPOXANPRIBOSYLTRAN-RXN HYPOXANPRIBOSYLTRAN-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** isoleucine-trna ligase
+
** hypoxanthine phosphoribosyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.5 ec-6.1.1.5]
+
** [http://enzyme.expasy.org/EC/2.4.2.8 ec-2.4.2.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[ILE]][c] '''+''' 1 [[ILE-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ILE-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[HYPOXANTHINE]][c] '''+''' 1 [[PRPP]][c] '''=>''' 1 [[IMP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03174]]
+
* Gene: [[SJ12523]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16361]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03173]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-6609]], adenine and adenosine salvage III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6609 PWY-6609]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6610]], adenine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6610 PWY-6610]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11061 11061]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17973 17973]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03656 R03656]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01132 R01132]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P18330 P18330]
+
** [http://www.uniprot.org/uniprot/Q9JWG0 Q9JWG0]
−
** [http://www.uniprot.org/uniprot/P36422 P36422]
+
** [http://www.uniprot.org/uniprot/P45078 P45078]
−
** [http://www.uniprot.org/uniprot/O29622 O29622]
+
** [http://www.uniprot.org/uniprot/Q59049 Q59049]
−
** [http://www.uniprot.org/uniprot/P47587 P47587]
+
** [http://www.uniprot.org/uniprot/O27375 O27375]
−
** [http://www.uniprot.org/uniprot/Q9ZCU4 Q9ZCU4]
+
** [http://www.uniprot.org/uniprot/Q64531 Q64531]
−
** [http://www.uniprot.org/uniprot/P46213 P46213]
+
** [http://www.uniprot.org/uniprot/Q8IJS1 Q8IJS1]
−
** [http://www.uniprot.org/uniprot/P41257 P41257]
+
** [http://www.uniprot.org/uniprot/P00492 P00492]
−
** [http://www.uniprot.org/uniprot/Q9JVY4 Q9JVY4]
+
** [http://www.uniprot.org/uniprot/P00494 P00494]
−
** [http://www.uniprot.org/uniprot/Q58357 Q58357]
+
** [http://www.uniprot.org/uniprot/P00493 P00493]
−
** [http://www.uniprot.org/uniprot/O83466 O83466]
+
** [http://www.uniprot.org/uniprot/P09383 P09383]
−
** [http://www.uniprot.org/uniprot/Q9Z972 Q9Z972]
+
** [http://www.uniprot.org/uniprot/P07833 P07833]
−
** [http://www.uniprot.org/uniprot/P56456 P56456]
+
** [http://www.uniprot.org/uniprot/P20035 P20035]
−
** [http://www.uniprot.org/uniprot/O58792 O58792]
+
** [http://www.uniprot.org/uniprot/P18134 P18134]
−
** [http://www.uniprot.org/uniprot/O84022 O84022]
+
** [http://www.uniprot.org/uniprot/P27605 P27605]
−
** [http://www.uniprot.org/uniprot/Q9ZJJ1 Q9ZJJ1]
+
** [http://www.uniprot.org/uniprot/P37171 P37171]
−
** [http://www.uniprot.org/uniprot/O66651 O66651]
+
** [http://www.uniprot.org/uniprot/Q64401 Q64401]
−
** [http://www.uniprot.org/uniprot/Q9CEH8 Q9CEH8]
+
** [http://www.uniprot.org/uniprot/Q02522 Q02522]
−
** [http://www.uniprot.org/uniprot/O27428 O27428]
+
** [http://www.uniprot.org/uniprot/Q07010 Q07010]
−
** [http://www.uniprot.org/uniprot/Q45477 Q45477]
+
** [http://www.uniprot.org/uniprot/Q8X945 Q8X945]
−
** [http://www.uniprot.org/uniprot/O51773 O51773]
+
** [http://www.uniprot.org/uniprot/P42085 P42085]
−
** [http://www.uniprot.org/uniprot/P46207 P46207]
+
** [http://www.uniprot.org/uniprot/P37472 P37472]
−
** [http://www.uniprot.org/uniprot/P41252 P41252]
+
** [http://www.uniprot.org/uniprot/Q9ZNK6 Q9ZNK6]
−
** [http://www.uniprot.org/uniprot/P41972 P41972]
 
−
** [http://www.uniprot.org/uniprot/P48526 P48526]
 
−
** [http://www.uniprot.org/uniprot/P75258 P75258]
 
−
** [http://www.uniprot.org/uniprot/P73505 P73505]
 
−
** [http://www.uniprot.org/uniprot/Q49024 Q49024]
 
−
** [http://www.uniprot.org/uniprot/Q49074 Q49074]
 
−
** [http://www.uniprot.org/uniprot/P43824 P43824]
 
−
** [http://www.uniprot.org/uniprot/P09436 P09436]
 
−
** [http://www.uniprot.org/uniprot/P00956 P00956]
 
−
** [http://www.uniprot.org/uniprot/Q94425 Q94425]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=isoleucine-trna ligase}}
+
{{#set: common-name=hypoxanthine phosphoribosyltransferase}}
−
{{#set: ec-number=ec-6.1.1.5}}
+
{{#set: ec-number=ec-2.4.2.8}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:29, 26 August 2019

Reaction HYPOXANPRIBOSYLTRAN-RXN

  • direction:
    • left-to-right
  • common-name:
    • hypoxanthine phosphoribosyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6609, adenine and adenosine salvage III: PWY-6609
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6610, adenine salvage: PWY-6610
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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