Difference between revisions of "ATDTM"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SIROHEME-FERROCHELAT-RXN SIROHEME-FERROCHELAT-RXN] == * direction: ** left-to-right * common-name:...")
(Created page with "Category:reaction == Reaction FPAIF == * direction: ** reversible * common-name: ** phosphoribosylaminoimidazolecarboxamide formyltransferase == Reaction formula == * 1.0...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SIROHEME-FERROCHELAT-RXN SIROHEME-FERROCHELAT-RXN] ==
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== Reaction FPAIF ==
 
* direction:
 
* direction:
** left-to-right
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** reversible
 
* common-name:
 
* common-name:
** sirohydrochlorin ferrochelatase
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** phosphoribosylaminoimidazolecarboxamide formyltransferase
* ec-number:
 
** [http://enzyme.expasy.org/EC/4.99.1.4 ec-4.99.1.4]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[FE+2]][c] '''+''' 1 [[SIROHYDROCHLORIN]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[SIROHEME]][c]
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* 1.0 [[10-FORMYL-THF]][c] '''+''' 1.0 [[AICAR]][c] '''<=>''' 1.0 [[PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE]][c] '''+''' 1.0 [[THF]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ19170]]
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* Gene: [[SJ21660]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: direction=reversible}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24361 24361]
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{{#set: common-name=phosphoribosylaminoimidazolecarboxamide formyltransferase}}
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R02864 R02864]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=sirohydrochlorin ferrochelatase}}
 
{{#set: ec-number=ec-4.99.1.4}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=1}}
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{{#set: nb pathway associated=0}}
{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction category=orthology}}
{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 20:43, 18 December 2020

Reaction FPAIF

  • direction:
    • reversible
  • common-name:
    • phosphoribosylaminoimidazolecarboxamide formyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links