Difference between revisions of "ATDTM"

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(Created page with "Category:reaction == Reaction KYNURENINE-3-MONOOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** kynurenine 3-monooxygenase * ec-number: ** [http://enzyme.e...")
(Created page with "Category:reaction == Reaction BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN == * direction: ** reversible * common-name: ** benzaldehyde dehydrogenase (nad+) * ec-number: ** [http:/...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction KYNURENINE-3-MONOOXYGENASE-RXN ==
+
== Reaction BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
** kynurenine 3-monooxygenase
+
** benzaldehyde dehydrogenase (nad+)
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.14.13.9 ec-1.14.13.9]
+
** [http://enzyme.expasy.org/EC/1.2.1.28 ec-1.2.1.28]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-14736]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-HYDROXY-L-KYNURENINE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[BENZALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[BENZOATE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ04699]]
+
* Gene: [[SJ06456]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
* Gene: [[SJ07912]]
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* Gene: [[SJ06470]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-5651]], L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde:
+
* [[PWY-6766]], salicin biosynthesis:
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
* [[PWY-7765]], 3-hydroxy-4-methyl-anthranilate biosynthesis II:
+
* [[PWY-6763]], salicortin biosynthesis:
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''11''' reactions in the full pathway
* [[PWY-7717]], 3-hydroxy-4-methyl-anthranilate biosynthesis I:
+
* [[PWY-6444]], benzoate biosynthesis II (CoA-independent, non-&beta;-oxidative):
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
* [[PWY-6309]], L-tryptophan degradation XI (mammalian, via kynurenine):
+
* [[TOLUENE-DEG-CATECHOL-PWY]], toluene degradation to benzoate:
** '''7''' reactions found over '''11''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-1501]], mandelate degradation I:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6446]], benzoate biosynthesis III (CoA-dependent, non-&beta;-oxidative):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20546 20546]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R01960 R01960]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01419 R01419]
{{#set: direction=left-to-right}}
+
* UNIPROT:
{{#set: common-name=kynurenine 3-monooxygenase}}
+
** [http://www.uniprot.org/uniprot/P43503 P43503]
{{#set: ec-number=ec-1.14.13.9}}
+
{{#set: direction=reversible}}
 +
{{#set: common-name=benzaldehyde dehydrogenase (nad+)}}
 +
{{#set: ec-number=ec-1.2.1.28}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=6}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:17, 14 January 2021

Reaction BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN

  • direction:
    • reversible
  • common-name:
    • benzaldehyde dehydrogenase (nad+)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6766, salicin biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6763, salicortin biosynthesis:
    • 1 reactions found over 11 reactions in the full pathway
  • PWY-6444, benzoate biosynthesis II (CoA-independent, non-β-oxidative):
    • 1 reactions found over 4 reactions in the full pathway
  • TOLUENE-DEG-CATECHOL-PWY, toluene degradation to benzoate:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-1501, mandelate degradation I:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6446, benzoate biosynthesis III (CoA-dependent, non-β-oxidative):
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links