Difference between revisions of "ATDTM"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYPOXANPRIBOSYLTRAN-RXN HYPOXANPRIBOSYLTRAN-RXN] == * direction: ** left-to-right * common-name: **...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SIROHEME-FERROCHELAT-RXN SIROHEME-FERROCHELAT-RXN] == * direction: ** left-to-right * common-name:...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYPOXANPRIBOSYLTRAN-RXN HYPOXANPRIBOSYLTRAN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SIROHEME-FERROCHELAT-RXN SIROHEME-FERROCHELAT-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** hypoxanthine phosphoribosyltransferase
+
** sirohydrochlorin ferrochelatase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/2.4.2.8 ec-2.4.2.8]
+
** [http://enzyme.expasy.org/EC/4.99.1.4 ec-4.99.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[HYPOXANTHINE]][c] '''+''' 1 [[PRPP]][c] '''=>''' 1 [[IMP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[FE+2]][c] '''+''' 1 [[SIROHYDROCHLORIN]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[SIROHEME]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ12523]]
+
* Gene: [[SJ19170]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6609]], adenine and adenosine salvage III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6609 PWY-6609]
+
* [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
* [[PWY-6610]], adenine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6610 PWY-6610]
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17973 17973]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24361 24361]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R01132 R01132]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02864 R02864]
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/Q9JWG0 Q9JWG0]
 
** [http://www.uniprot.org/uniprot/P45078 P45078]
 
** [http://www.uniprot.org/uniprot/Q59049 Q59049]
 
** [http://www.uniprot.org/uniprot/O27375 O27375]
 
** [http://www.uniprot.org/uniprot/Q64531 Q64531]
 
** [http://www.uniprot.org/uniprot/Q8IJS1 Q8IJS1]
 
** [http://www.uniprot.org/uniprot/P00492 P00492]
 
** [http://www.uniprot.org/uniprot/P00494 P00494]
 
** [http://www.uniprot.org/uniprot/P00493 P00493]
 
** [http://www.uniprot.org/uniprot/P09383 P09383]
 
** [http://www.uniprot.org/uniprot/P07833 P07833]
 
** [http://www.uniprot.org/uniprot/P20035 P20035]
 
** [http://www.uniprot.org/uniprot/P18134 P18134]
 
** [http://www.uniprot.org/uniprot/P27605 P27605]
 
** [http://www.uniprot.org/uniprot/P37171 P37171]
 
** [http://www.uniprot.org/uniprot/Q64401 Q64401]
 
** [http://www.uniprot.org/uniprot/Q02522 Q02522]
 
** [http://www.uniprot.org/uniprot/Q07010 Q07010]
 
** [http://www.uniprot.org/uniprot/Q8X945 Q8X945]
 
** [http://www.uniprot.org/uniprot/P42085 P42085]
 
** [http://www.uniprot.org/uniprot/P37472 P37472]
 
** [http://www.uniprot.org/uniprot/Q9ZNK6 Q9ZNK6]
 
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=hypoxanthine phosphoribosyltransferase}}
+
{{#set: common-name=sirohydrochlorin ferrochelatase}}
{{#set: ec-number=ec-2.4.2.8}}
+
{{#set: ec-number=ec-4.99.1.4}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:32, 27 August 2019

Reaction SIROHEME-FERROCHELAT-RXN

  • direction:
    • left-to-right
  • common-name:
    • sirohydrochlorin ferrochelatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5194, siroheme biosynthesis: PWY-5194
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links