Difference between revisions of "Annotation"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTATHIONE-SYN-RXN GLUTATHIONE-SYN-RXN] == * direction: ** left-to-right * common-name: ** glutath...")
 
(Created page with "{{#ask: Category:reaction reconstruction category::annotation | ?common-name | ?ec-number | ?reconstruction tool | ?reconstruction source | ?reconstruction comment | ?...")
 
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[[Category:reaction]]
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{{#ask: [[Category:reaction]] [[reconstruction category::annotation]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTATHIONE-SYN-RXN GLUTATHIONE-SYN-RXN] ==
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| ?common-name
* direction:
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| ?ec-number
** left-to-right
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| ?reconstruction tool
* common-name:
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| ?reconstruction source
** glutathione synthetase
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| ?reconstruction comment
* ec-number:
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| ?nb gene associated
** [http://enzyme.expasy.org/EC/6.3.2.3 ec-6.3.2.3]
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| ?nb pathway associated
== Reaction formula ==
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}}
* 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[L-GAMMA-GLUTAMYLCYSTEINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[GLUTATHIONE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
* Gene: [[SJ10036]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
* [[GLUTATHIONESYN-PWY]], glutathione biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GLUTATHIONESYN-PWY GLUTATHIONESYN-PWY]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13558 13558]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00497 R00497]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/Q9JTJ6 Q9JTJ6]
 
** [http://www.uniprot.org/uniprot/P46413 P46413]
 
** [http://www.uniprot.org/uniprot/P45480 P45480]
 
** [http://www.uniprot.org/uniprot/P35667 P35667]
 
** [http://www.uniprot.org/uniprot/P35669 P35669]
 
** [http://www.uniprot.org/uniprot/P35668 P35668]
 
** [http://www.uniprot.org/uniprot/P48637 P48637]
 
** [http://www.uniprot.org/uniprot/P46416 P46416]
 
** [http://www.uniprot.org/uniprot/P51855 P51855]
 
** [http://www.uniprot.org/uniprot/P73493 P73493]
 
** [http://www.uniprot.org/uniprot/P04425 P04425]
 
** [http://www.uniprot.org/uniprot/O22494 O22494]
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=glutathione synthetase}}
 
{{#set: ec-number=ec-6.3.2.3}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}
 

Latest revision as of 11:18, 18 March 2021