Difference between revisions of "BRANCHED-CHAINAMINOTRANSFERLEU-RXN"

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(Created page with "Category:reaction == Reaction METHYLVALERATE-RXN == * direction: ** reversible * common-name: ** 3-methyl-2-oxobutanoate dehydrogenase [(s)-2-methylbutanoyl-transferring)...")
(Created page with "Category:reaction == Reaction TRYPTOPHAN--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** tryptophan-trna ligase * ec-number: ** [http://enzyme.expasy.o...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction METHYLVALERATE-RXN ==
+
== Reaction TRYPTOPHAN--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
** 3-methyl-2-oxobutanoate dehydrogenase [(s)-2-methylbutanoyl-transferring)
+
** tryptophan-trna ligase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
+
** [http://enzyme.expasy.org/EC/6.1.1.2 ec-6.1.1.2]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MB-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[TRP-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ18449]]
+
* Gene: [[SJ20749]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21092]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ11017]]
+
* Gene: [[SJ02283]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging:
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 24: Line 29:
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24081 24081]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
 
* UNIPROT:
 
* UNIPROT:
** [http://www.uniprot.org/uniprot/P21839 P21839]
+
** [http://www.uniprot.org/uniprot/P23381 P23381]
** [http://www.uniprot.org/uniprot/P21953 P21953]
+
** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
** [http://www.uniprot.org/uniprot/P37940 P37940]
+
** [http://www.uniprot.org/uniprot/O84589 O84589]
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
+
** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
** [http://www.uniprot.org/uniprot/P37941 P37941]
+
** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
** [http://www.uniprot.org/uniprot/P11178 P11178]
+
** [http://www.uniprot.org/uniprot/P43835 P43835]
** [http://www.uniprot.org/uniprot/P12694 P12694]
+
** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
** [http://www.uniprot.org/uniprot/P09061 P09061]
+
** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
** [http://www.uniprot.org/uniprot/P09060 P09060]
+
** [http://www.uniprot.org/uniprot/O26352 O26352]
** [http://www.uniprot.org/uniprot/P11960 P11960]
+
** [http://www.uniprot.org/uniprot/O51038 O51038]
** [http://www.uniprot.org/uniprot/O84344 O84344]
+
** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
+
** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
+
** [http://www.uniprot.org/uniprot/Q58810 Q58810]
** [http://www.uniprot.org/uniprot/P35738 P35738]
+
** [http://www.uniprot.org/uniprot/O83640 O83640]
** [http://www.uniprot.org/uniprot/P50136 P50136]
+
** [http://www.uniprot.org/uniprot/P67590 P67590]
** [http://www.uniprot.org/uniprot/O48615 O48615]
+
** [http://www.uniprot.org/uniprot/O67115 O67115]
** [http://www.uniprot.org/uniprot/O03849 O03849]
+
** [http://www.uniprot.org/uniprot/P47372 P47372]
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
+
** [http://www.uniprot.org/uniprot/P32921 P32921]
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
+
** [http://www.uniprot.org/uniprot/Q12109 Q12109]
** [http://www.uniprot.org/uniprot/O82450 O82450]
+
** [http://www.uniprot.org/uniprot/Q49901 Q49901]
 +
** [http://www.uniprot.org/uniprot/P75510 P75510]
 +
** [http://www.uniprot.org/uniprot/O42875 O42875]
 +
** [http://www.uniprot.org/uniprot/O96771 O96771]
 +
** [http://www.uniprot.org/uniprot/P17248 P17248]
 +
** [http://www.uniprot.org/uniprot/P21656 P21656]
 +
** [http://www.uniprot.org/uniprot/P04803 P04803]
 +
** [http://www.uniprot.org/uniprot/P00954 P00954]
 
</div>
 
</div>
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
{{#set: common-name=3-methyl-2-oxobutanoate dehydrogenase [(s)-2-methylbutanoyl-transferring)}}
+
{{#set: common-name=tryptophan-trna ligase}}
{{#set: ec-number=ec-1.2.4.4}}
+
{{#set: ec-number=ec-6.1.1.2}}
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:28, 15 January 2021

Reaction TRYPTOPHAN--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • tryptophan-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links