Difference between revisions of "CDPKIN-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5915 PWY-5915] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-1117 tax-11...")
 
(Created page with "Category:reaction == Reaction CDPKIN-RXN == * direction: ** left-to-right * common-name: ** cdp kinase ** nucleoside diphosphate kinase * ec-number: ** [http://enzyme.expa...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:pathway]]
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[[Category:reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5915 PWY-5915] ==
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== Reaction CDPKIN-RXN ==
* taxonomic-range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=tax-1117 tax-1117]
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** left-to-right
 
* common-name:
 
* common-name:
** phycoerythrobilin biosynthesis i
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** cdp kinase
== Reaction(s) found ==
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** nucleoside diphosphate kinase
* [[1.3.7.2-RXN]]
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* ec-number:
* [[1.3.7.3-RXN]]
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** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
* [[RXN-17523]]
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== Reaction formula ==
== Reaction(s) not found ==
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* 1 [[ATP]][c] '''+''' 1 [[CDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CTP]][c]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15985 RXN-15985]
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== Gene(s) associated with this reaction  ==
{{#set: taxonomic-range=tax-1117}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
{{#set: common-name=phycoerythrobilin biosynthesis i}}
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* Gene: [[SJ07124]]
{{#set: nb reaction found=3}}
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** Category: [[annotation]]
{{#set: completion rate=0.75}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
{{#set: nb total reaction=4}}
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ21705]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ21967]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ20794]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ10125]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16893]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21816]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ20076]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ08159]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
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== Pathway(s) ==
 +
* [[PWY-7205]], CMP phosphorylation:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
== External links  ==
 +
* METANETX-RXN : MNXR101936
 +
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25238 25238]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00570 R00570]
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{{#set: direction=left-to-right}}
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{{#set: common-name=cdp kinase|nucleoside diphosphate kinase}}
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{{#set: ec-number=ec-2.7.4.6}}
 +
{{#set: nb gene associated=9}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction CDPKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • cdp kinase
    • nucleoside diphosphate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7205, CMP phosphorylation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR101936
  • RHEA:
  • LIGAND-RXN: