Difference between revisions of "CDPKIN-RXN"

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(Created page with "Category:reaction == Reaction IGPSYN-RXN == * direction: ** left-to-right * common-name: ** indole-3-glycerol phosphate synthase * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction CDPKIN-RXN == * direction: ** left-to-right * common-name: ** cdp kinase ** nucleoside diphosphate kinase * ec-number: ** [http://enzyme.expa...")
 
(3 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction IGPSYN-RXN ==
+
== Reaction CDPKIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** indole-3-glycerol phosphate synthase
+
** cdp kinase
 +
** nucleoside diphosphate kinase
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/4.1.1.48 ec-4.1.1.48]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CTP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ01083]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ07124]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21705]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21967]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20794]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10125]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ17722]]
+
* Gene: [[SJ16893]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ04593]]
+
* Gene: [[SJ21816]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 27: Line 47:
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20076]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08159]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
+
* [[PWY-7205]], CMP phosphorylation:
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR101936
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23477 23477]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25238 25238]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00570 R00570]
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P42393 P42393]
 
** [http://www.uniprot.org/uniprot/P20577 P20577]
 
** [http://www.uniprot.org/uniprot/P18304 P18304]
 
** [http://www.uniprot.org/uniprot/Q06121 Q06121]
 
** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
 
** [http://www.uniprot.org/uniprot/P20578 P20578]
 
** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
 
** [http://www.uniprot.org/uniprot/Q58328 Q58328]
 
** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
 
** [http://www.uniprot.org/uniprot/P03964 P03964]
 
** [http://www.uniprot.org/uniprot/P00910 P00910]
 
** [http://www.uniprot.org/uniprot/P00909 P00909]
 
** [http://www.uniprot.org/uniprot/P00911 P00911]
 
** [http://www.uniprot.org/uniprot/P17217 P17217]
 
** [http://www.uniprot.org/uniprot/P20409 P20409]
 
** [http://www.uniprot.org/uniprot/P00937 P00937]
 
** [http://www.uniprot.org/uniprot/P00908 P00908]
 
** [http://www.uniprot.org/uniprot/P05328 P05328]
 
** [http://www.uniprot.org/uniprot/P06531 P06531]
 
** [http://www.uniprot.org/uniprot/P18483 P18483]
 
** [http://www.uniprot.org/uniprot/P25170 P25170]
 
** [http://www.uniprot.org/uniprot/P26938 P26938]
 
** [http://www.uniprot.org/uniprot/P24773 P24773]
 
** [http://www.uniprot.org/uniprot/Q01999 Q01999]
 
** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
 
** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
 
** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
 
** [http://www.uniprot.org/uniprot/Q92370 Q92370]
 
** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
 
** [http://www.uniprot.org/uniprot/P94327 P94327]
 
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=indole-3-glycerol phosphate synthase}}
+
{{#set: common-name=cdp kinase|nucleoside diphosphate kinase}}
{{#set: ec-number=ec-4.1.1.48}}
+
{{#set: ec-number=ec-2.7.4.6}}
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=9}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction CDPKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • cdp kinase
    • nucleoside diphosphate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7205, CMP phosphorylation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR101936
  • RHEA:
  • LIGAND-RXN: