Difference between revisions of "CHD-RXN"

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(Created page with "Category:reaction == Reaction 1.1.1.271-RXN == * direction: ** left-to-right * common-name: ** gdp-fucose synthase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.271 e...")
(Created page with "Category:reaction == Reaction ExchangeSeed-Light == * direction: ** reversible == Reaction formula == * 1.0 Light[C-BOUNDARY] '''<=>''' 1.0 Light[e] == Gene(s) ass...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction 1.1.1.271-RXN ==
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== Reaction ExchangeSeed-Light ==
 
* direction:
 
* direction:
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** left-to-right
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** reversible
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* common-name:
 
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** gdp-fucose synthase
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.1.1.271 ec-1.1.1.271]
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-13118]][c] '''+''' 1 [[NADP]][c]
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* 1.0 [[Light]][C-BOUNDARY] '''<=>''' 1.0 [[Light]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ05880]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose):
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: direction=reversible}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18887 18887]
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{{#set: nb gene associated=0}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=0}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05692 R05692]
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{{#set: reconstruction category=manual}}
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{{#set: direction=left-to-right}}
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{{#set: reconstruction tool=curation}}
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{{#set: common-name=gdp-fucose synthase}}
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
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{{#set: ec-number=ec-1.1.1.271}}
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{{#set: reconstruction source=import_from_medium}}
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{{#set: nb gene associated=1}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 11:25, 15 January 2021

Reaction ExchangeSeed-Light

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CHD-RXN&oldid=116201"